Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_O08
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 40 0.002
03_02_0484 + 8805053-8805538 40 0.002
03_02_0483 - 8804021-8804485 40 0.002
02_02_0077 - 6586638-6587165 40 0.003
04_04_0017 + 22176759-22177406 39 0.006
03_02_0478 + 8775892-8776377 39 0.006
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 37 0.019
01_01_0229 - 1943473-1943922 37 0.025
11_02_0041 - 7669692-7670312 36 0.033
01_01_0231 + 1951047-1951499 36 0.033
01_01_0227 + 1933247-1933699 34 0.13
01_01_0599 - 4448290-4448790 34 0.17
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440... 33 0.30
02_05_0494 + 29486960-29487454 33 0.40
05_06_0034 + 25082875-25084113 29 3.7
07_03_1697 - 28795521-28797328,28797430-28797550 29 4.9
01_01_0228 + 1940149-1940649 29 6.5
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 8.6
>03_02_0485 - 8808139-8808618
Length = 159
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 584
G+F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 112 GKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 584
G+F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 114 GKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 584
G+F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 107 GKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>02_02_0077 - 6586638-6587165
Length = 175
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG 629
G+F+RR+ LPE A + V + DGVLT+T +K P K R V + G
Sbjct: 116 GKFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>04_04_0017 + 22176759-22177406
Length = 215
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG 629
G+F R+ LP+ A +++ + L + GVLT+ + PD +KG R V IA G
Sbjct: 140 GRFWRQLRLPDNADLDSIAASLDN-GVLTVRFRKLAPDQIKGPRVVGIASAG 190
>03_02_0478 + 8775892-8776377
Length = 161
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/35 (42%), Positives = 27/35 (77%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 578
G+F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 114 GKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.1 bits (82), Expect = 0.019
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 575
GQF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 103 GQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 575
GQF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 GQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 36.3 bits (80), Expect = 0.033
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 584
G+F RR+ +P GA V +RL DGVLT+T P KVP
Sbjct: 140 GRFWRRFRMPPGADVGRVAARL-DDGVLTVTVP-KVP 174
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.3 bits (80), Expect = 0.033
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 575
GQF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 103 GQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 578
G+F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 103 GKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>01_01_0599 - 4448290-4448790
Length = 166
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 474 GQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 617
G+F+R++ LP+ A + + S + DGVLT+T + P K + + +
Sbjct: 117 GKFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163
>01_01_0591 -
4401847-4402063,4402860-4403002,4403339-4403447,
4403546-4404707,4405754-4405865,4405980-4406015
Length = 592
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 562 SLRRGRCPTPSRERERCPSHRPVRSQGD 645
+LRR R P SR R +C SH P S+GD
Sbjct: 148 ALRRARPPASSRPRYKCYSHPPSPSRGD 175
>02_05_0494 + 29486960-29487454
Length = 164
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 483 VRRYALPEGAAPETVESRLSSDGVLTITAPRK 578
V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 109 VTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>05_06_0034 + 25082875-25084113
Length = 412
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 673 SRXFFALVLDLLANG---PVCAMGTFLSPLTASGTFLGAVMVSTPSDDSRDSTVSGAAP 506
+R F+ + ++ G P+ A+G LSP S + L A + S+PS S S+ S P
Sbjct: 111 ARTVFSQIARIVLGGIVKPIQALGQILSPAN-SASVLAASVTSSPSSSSSSSSSSPPLP 168
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 496 RCLKARRLRLWNRD---CHQTGYSPSLRRGRCPTPSRERERCPSHR 624
R L +RR R D CH + PS G CP P ++ C S R
Sbjct: 339 RGLPSRRYRRCRADHPCCHDARHGPSCHHGCCP-PHHGKQACTSCR 383
>01_01_0228 + 1940149-1940649
Length = 166
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 480 FVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGER 605
+V R LP G E V + VL IT R V KG+R
Sbjct: 52 YVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQR 93
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 577 RCPTPSRERERCPSHRPVRSQGDQGPERRXXE 672
R P R R R P HRP+RS RR E
Sbjct: 362 RRPQSLRHRSRSPIHRPIRSPSRSISPRRDQE 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,831
Number of Sequences: 37544
Number of extensions: 359642
Number of successful extensions: 959
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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