Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_O02
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 6e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 38 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.008
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.008
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.010
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.018
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.041
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.054
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 33 0.054
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.054
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.072
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.072
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.095
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.17
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.22
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.38
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.38
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.38
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.51
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.51
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 0.88
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 1.2
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 1.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.6
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.6
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 4.7
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 4.7
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.5 bits (93), Expect = 2e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 362
+YVG L + L F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 363 ACSAMNGTEMLGATLKVE 416
A +++NG+ G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +3
Query: 243 KXEXLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATLK 410
K + LE F K+GK+ + + G FAF+ ++ + AE+A +++NGTE+ G +
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179
Query: 411 VE 416
V+
Sbjct: 180 VD 181
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 380
+YV G +G++ L EF+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 381 G--TEMLGATLKVE 416
G E G L+VE
Sbjct: 69 GRRLERGGGVLRVE 82
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 231 VEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 410
V+ ++ + E +KYGK+ + V N G F++FEN AE A + ++ G T+K
Sbjct: 526 VQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIK 585
Query: 411 VEI 419
I
Sbjct: 586 ASI 588
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 377
R+ V + + E ++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 378 NGTEMLGATLKV 413
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 207 TRVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 386
TR++VG + E + F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 387 EMLGATLKVE 416
E +G+ + VE
Sbjct: 61 EFMGSRIVVE 70
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 204 GTRVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 383
G R+ V L E + + L+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Query: 384 TEMLG 398
+ G
Sbjct: 157 EVIKG 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 368
R+YVGGL I+ LE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 369 SAMNGTEMLGATLKVE 416
S ++ G+ L++E
Sbjct: 66 SYLSNATFKGSKLRIE 81
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 204 GTRVYVGGLVEGIKXEXLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 371
GT++ + L + ++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 372 AMNGTEMLGATLKVE 416
A+ T +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 374
R+++ L + L+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 375 MNGTEMLGATLKV 413
++ G L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 318 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 422
GF F+EF++ A A AMNG + G L++++S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.7 bits (76), Expect = 0.018
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 377
V+VG L + + L +EF++YG + V ++ G+ +++FE EA A A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAA 323
Query: 378 NGT-EMLGATLKVEIS 422
NGT E+ G + +++S
Sbjct: 324 NGTKEIDGRMVNLDLS 339
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.5 bits (73), Expect = 0.041
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 377
+++ L K +EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 378 NGTEMLGATLKVEI 419
G + G + V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.054
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 377
VYVG + + E L+ F G +N V + + P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 378 NGTEMLGATLKV 413
NG+ + LKV
Sbjct: 116 NGSMLHERPLKV 127
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 33.1 bits (72), Expect = 0.054
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 255 LEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 422
LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++ S
Sbjct: 46 LEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.054
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 356
V++G L + +E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.7 bits (71), Expect = 0.072
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGT 386
+++ L I E + F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 387 EMLGATLKV 413
+ L V
Sbjct: 74 NFMDRYLVV 82
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 32.7 bits (71), Expect = 0.072
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 380
+YV L G + F YG + +W+ L+P A + +E+L A A A++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALH 56
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.3 bits (70), Expect = 0.095
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 392
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 393 LGATLKVEIS 422
+ V IS
Sbjct: 648 FFGSDPVCIS 657
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 240 IKXEXLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 383
+ E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 362
RV+VG L K + F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 363 ACSAMNG 383
A +NG
Sbjct: 105 AIETLNG 111
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNS-VWVALNPP----------------GFAFIEFE 341
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 342 NLQEAEDACSAMNGTEMLGATLKVE 416
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 374
++Y+ L + + + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 375 MNGTEMLGATLKVEIS 422
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 377
+YVG L + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 378 NGTEMLGATLKV 413
N T + G ++
Sbjct: 142 NYTLIKGRPCRI 153
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 318 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 413
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 377
+YVG L G + + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 378 NGTEMLGATLKVEI 419
+ + G L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 380
V+VG L + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 381 GTEMLGATLKV 413
+ + ++V
Sbjct: 68 YSILCDRCIRV 78
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.88
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 198 SGGTRVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 362
+ G V+VG + + + + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 363 ACSAMNGTEMLGATLKVE 416
A +N +E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 380
+YVG L L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 381 GTEMLGATLKV 413
G G L++
Sbjct: 342 GYRYGGRPLQL 352
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 377
VYVG L E + F K G++ + + ++ P GF F+E+ Q+A D+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 378 NGTEM 392
+ T +
Sbjct: 94 SRTSL 98
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 213 VYVGGLVEGIKXEXLEREFDKYGKLNSVW 299
+YVG + + E + + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 249 EXLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 413
E LE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 414 EIS 422
+ S
Sbjct: 318 DFS 320
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 249 EXLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 419
+ + E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 274 DDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 210 RVYVGGLVEGIKXEXLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 371
+++VGG+ E F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,621
Number of Sequences: 5004
Number of extensions: 42347
Number of successful extensions: 135
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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