Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O01
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    83   4e-17
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom...    28   1.6  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    26   6.4  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 50/173 (28%), Positives = 87/173 (50%)
 Frame = +1

Query: 325 NGFIAVHCGAGYHSENLRKEYQKTCNQACRKASEILKQGGNAVDAVEKAIIELENSPLSN 504
           NG + +H GAG +S     + +KTC+ AC+ A + LK G +A+ A  +A   +E+SP++N
Sbjct: 3   NGLVILHAGAGLYSGQREIQAKKTCSDACKAAIQALKVGQSALSAAIQAAKIMEDSPVTN 62

Query: 505 AGYGSNLTWDGTVXCDASLMNGQTLHFGACGAVSNVWNPITLAKNLCIKQCDSLSLGRVH 684
           AG GSNL  DG V C+A +M+ ++    +    +   +P      +  K+      G V 
Sbjct: 63  AGVGSNLNIDGKVECEAGVMDSESGLTASVACCNCCRHPSEACLYILNKRKVMSQHGLVP 122

Query: 685 LGILTGQGARSWAQRMGLEIVDDHKMISARAFRNFKHCKRKLKKYSIQNDVKL 843
             +L G G         +++V +  +I+ R+ +     + K K+   QN + L
Sbjct: 123 PAMLVGNGIEKLLLHSNIKLVPESHLITERSMKT----QIKWKEILYQNPINL 171


>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 154

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 301 YI*RSLNM-NGFIAVHCGAGYHSENLRKEYQKTCNQACRKASEILKQGGNAVDAVEKAII 477
           Y+   LN+ N  + V  G GY+ E    E  +   + C   +  ++   NA+DA    I 
Sbjct: 75  YVPGKLNLGNSKLLVDIGTGYYVEKSAGEATEYYKRKCEYLASSIENLNNAIDAKSVQIR 134

Query: 478 ELEN 489
            ++N
Sbjct: 135 AVQN 138


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 AVDAVEKAIIELENSPLSNAGYGSNLTWD 534
           AVD  EKAI  ++ +PL +A + S   WD
Sbjct: 148 AVDYSEKAIDVVKQNPLYDAKFCSASVWD 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,560
Number of Sequences: 5004
Number of extensions: 64456
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)