Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_O01
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 110 1e-24
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 79 6e-15
03_05_0219 - 22059388-22059729,22059838-22059999 73 4e-13
08_01_0495 - 4309816-4310592 30 2.9
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 3.8
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 28 8.8
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 28 8.8
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.8
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 110 bits (265), Expect = 1e-24
Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Frame = +1
Query: 319 NMNGFIAVHCGAGYHSENLRKEYQKTCNQACRKASEILKQG-GNAVDAVEKAIIELENSP 495
N F+AVH GAG+H+ K Y++ +AC A+ +L++G G ++DAV AI LE+ P
Sbjct: 37 NRRFFVAVHVGAGFHAPANEKAYRRAMKRACLAAAAVLREGNGTSLDAVAAAIQVLEDDP 96
Query: 496 LSNAGYGSNLTWDGTVXCDASLMNGQTLHFGACGAVSNVWNPITLAKNLCIKQ 654
++NAG GSNLT G V CDAS+M+G T FGA GAV V NPI +A +L +Q
Sbjct: 97 ITNAGRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNPIQIALHLAREQ 149
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 78.6 bits (185), Expect = 6e-15
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Frame = +1
Query: 334 IAVHCGAGYHS---ENLRKEYQKTCNQACRKASEILKQGGNAVDAVEKAIIELENSPLSN 504
IA+H GAG E+ ++E ++ + + + L+ G A+D VE + ELE+ P N
Sbjct: 6 IAIHGGAGVDPNLPEHRQEEAKRVLARCLQVGVDALRSGAAALDVVEAVVRELESDPFFN 65
Query: 505 AGYGSNLTWDGTVXCDASLMNGQTLHFGACGAVSNVWNPITLAKNLCIKQCDSLSLGRVH 684
+G GS LT GTV +AS+M+G+ GA VS V NP++LA+ + K S
Sbjct: 66 SGRGSALTRLGTVEMEASIMDGRGRRCGAVSGVSTVKNPVSLARLVMDKSPHS------- 118
Query: 685 LGILTGQGARSWAQRMGLEIVDDHKMIS 768
L GA +A+ GLE+VD+ I+
Sbjct: 119 --YLAFDGAEQFARDQGLEVVDNSYFIT 144
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 72.5 bits (170), Expect = 4e-13
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Frame = +1
Query: 322 MNGFIAVHCGAGYHSENL---RKEYQKTCNQACRK-ASEILKQGGNAVDAVEKAIIELEN 489
M +A+H GAG +L R+E + + C A+ L+ G A+D VE + ELEN
Sbjct: 1 MGWAVALHGGAGDIPRSLPPDRREPRLATLRRCLDLATAALRSGRAALDVVELVVRELEN 60
Query: 490 SPLSNAGYGSNLTWDGTVXCDASLMNGQTLHFGACGAVSNVWNPITLAK 636
P NAG GS LT DGTV +A++M+G TL GA +S V N ++LA+
Sbjct: 61 CPHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLAR 109
>08_01_0495 - 4309816-4310592
Length = 258
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 391 KTCNQACRKASEILKQGG--NAVDAVEKAIIELENSPLSNAGYGSNLTWDGTVXCDASLM 564
+ C C A+E+ + G A AV+ A+ E+E +PL+ GS + +
Sbjct: 134 RMCLARCANAAELRGERGLLRAARAVQAAVAEMEAAPLAGTADGSAIARVMQIPFSRMAN 193
Query: 565 NGQTLHFGACGA 600
+ FGA GA
Sbjct: 194 VAASPRFGAYGA 205
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Frame = -2
Query: 784 YEMLLQKSFCDHPQFQGPFFVPMIGHLV--Q*VYQG---XLYPKTNCHIV*CKDSWPVL* 620
+++ + + F HP GP F P +GHL+ Y G L + V +DS+P+
Sbjct: 91 FDVTIAQQFQQHPH--GPLFDPNVGHLLSTNQTYHGGQVALSHPNSVMPVPGEDSFPLQQ 148
Query: 619 D--SKHLKQHHKLQNVKFDHS*VMHHTXQYHPKLGLIHNQH 503
+ ++ + HH+ Q + HH Q + HNQ+
Sbjct: 149 NHHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQN 189
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 367 ENLRK-EYQKTCNQACRKASEILKQGGNA 450
E+ RK EY+K N+ +KA E +K+GG++
Sbjct: 446 ESERKAEYRKNANRWMKKAKEAMKKGGSS 474
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 671 KDKLSHCLMQRFLASVIGFQTFETAPQAPKCKV*PFISDASH 546
KD LSHCL R L F+ F +A P + F+ +H
Sbjct: 699 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNH 740
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 349 GAGYHSENLRKEYQKTCNQACRKASEILKQGGNAVDAVEKAIIELENSPLSNAGYGSNLT 528
G G E L K Y + + A+ L G+ VD + ++ SP G+G +
Sbjct: 24 GGGGGEEKLGKFYGWRRHLSSGPAASSLVLSGDLVDKIWSVCLQDIVSPEDTFGFGESFA 83
Query: 529 WD 534
WD
Sbjct: 84 WD 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,503,982
Number of Sequences: 37544
Number of extensions: 394493
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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