Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O01
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    31   0.019
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 514 GSNLTWDGTVXCDASLMNGQTLHFGACGAVSNV 612
           G+NL  +GTV C +S+ +   +  G CG  ++V
Sbjct: 147 GANLNLNGTVNCTSSIASSGVVSAGECGPAADV 179


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -2

Query: 553 HHTXQYHPKLGLI-HNQH 503
           HH  QYHP  G   H+QH
Sbjct: 321 HHPSQYHPHRGSSPHHQH 338


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 409 RPDCMFSDTLFLNFH 365
           RPDC F +   + FH
Sbjct: 89  RPDCFFKNAKKVTFH 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,581
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)