Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N24
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    56   6e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    55   2e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    33   0.061
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    29   1.3  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.0  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG++INFVT  D R +++IE FY+T I EMP ++A+LI
Sbjct: 352 FGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFVT  D R L+DIE +Y T I EMP ++ +++
Sbjct: 354 FGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI*GAYIFP 209
           FG +G+AI+F++ ADR  L  IE+   T I  +P  +   +   Y+FP
Sbjct: 375 FGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADR-RALKDIEDFYHTSIVEMPSD 173
           FGR G++INFV +      +  I++++   I  +P+D
Sbjct: 452 FGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 488


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 176 GQPHLRRLHFSDLYSVSCVLLRYL*EDLPTEPVKRT 283
           G P L+ L F DL  V    L  L  +LPTEP K+T
Sbjct: 203 GDP-LKDLLFKDLRPVQTKELESLFAELPTEPPKQT 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,409
Number of Sequences: 5004
Number of extensions: 24916
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)