Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N24
(972 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 57 2e-08
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 57 2e-08
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 55 7e-08
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899... 54 2e-07
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 48 1e-05
08_01_0397 - 3509186-3510291,3510322-3512335 29 4.2
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 29 4.2
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 5.6
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 29 7.4
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 66 FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
FGRKG+AINFV + D R L+DIE +Y T I EMP +VA+LI
Sbjct: 354 FGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 394
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 66 FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
FGRKG+AINFV + D R L+DIE +Y T I EMP +VA+LI
Sbjct: 354 FGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 394
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 55.2 bits (127), Expect = 7e-08
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +3
Query: 66 FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
FGRKG+AINFVT D R L DI+ FY+ +I E+P++VA+L+
Sbjct: 374 FGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
>06_03_1284 -
28988287-28988922,28989335-28989765,28989850-28989956,
28990066-28990136
Length = 414
Score = 54.0 bits (124), Expect = 2e-07
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +3
Query: 66 FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
FGRKG+AINFVT D R L DI+ FY+ I E+P++VA+L+
Sbjct: 374 FGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
>02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 48.0 bits (109), Expect = 1e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +3
Query: 69 GRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
GRKG+AI+F+T D R I+ F +T I E+PS+VA+L+
Sbjct: 990 GRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNVADLL 1029
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 69 GRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANL 185
GRKG A+ F++E + R D+ S +P D+ L
Sbjct: 756 GRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGL 794
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 236 IERRTQNINRKNVGALDEVGHITGHFNDTSVVEV-LNILQCSPVSFSHK 93
IE+R ++ V +DEV I G T VV V +N +Q P HK
Sbjct: 174 IEKRAFSLQSMRVLVIDEVDFIFGSSKQTDVVHVHVNPVQPMPSHLQHK 222
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 66 FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
FG G+A+N +T DR L IE T I +P + I
Sbjct: 455 FGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRAI 495
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 69 GRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANL 185
GRKG A+ F+++ + R D+ S +P D+ L
Sbjct: 608 GRKGFAVTFISDEEERYAPDLAKALELSEQAVPQDLKGL 646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,731,401
Number of Sequences: 37544
Number of extensions: 156588
Number of successful extensions: 348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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