Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N24
         (972 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    60   2e-09
U13876-4|AAX88826.1|  115|Caenorhabditis elegans Initiation fact...    60   2e-09
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    60   2e-09
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    56   5e-08
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    56   5e-08
U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical p...    39   0.005
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    34   0.18 

>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFVTE D R LK+IE +Y T I EMP  +A+LI
Sbjct: 362 FGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 402


>U13876-4|AAX88826.1|  115|Caenorhabditis elegans Initiation factor
           protein 1, isoformb protein.
          Length = 115

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFVTE D R LK+IE +Y T I EMP  +A+LI
Sbjct: 75  FGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 115


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFVTE D R LK+IE +Y T I EMP  +A+LI
Sbjct: 362 FGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 402


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFV + D R L+DIE +Y T I EMP ++A++I
Sbjct: 359 FGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADII 399


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 188
           FGRKG+AINFV + D R L+DIE +Y T I EMP ++A++I
Sbjct: 359 FGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADII 399


>U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical
           protein F57B9.3 protein.
          Length = 363

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMP 167
           FG KG+ I+F TE D   LK IE+ Y T I EMP
Sbjct: 320 FGSKGLPISFFTENDISDLKKIENHYSTRIEEMP 353


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 66  FGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDV 176
           FG  G+AIN +T  DR  L+ IE    T I  +P  V
Sbjct: 374 FGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTV 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,131,918
Number of Sequences: 27780
Number of extensions: 153771
Number of successful extensions: 372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)