Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N23
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
 Frame = -2

Query: 586 PPPXGXKXPPPPPXXPGXXGVXXXKXXGXXPXXXPPXPP----GGGRXF 452
           PP      PPPPP  PG  G          P   PP PP    GG R +
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGA--------GPPPPPPPPPAVSAGGSRYY 793



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 814 PPKKXPXGPPPXXPPPG 864
           PP     GPPP  PPPG
Sbjct: 753 PPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 618 SPPPXXGXXXXPPPXGXXXPLPPPXXPGXGG 526
           SPPP       P P     P+PPP  P  GG
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPP-APIMGG 760



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -1

Query: 587 PPPPGXKXXPSPPPXXRGXGGXXXXKXXXXPXXGPPXXPGGGAXF 453
           PPP      P PPP   G  G         P   PP    GG+ +
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG----AGPPPPPPPPPAVSAGGSRY 792



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
 Frame = -2

Query: 601 GXXXXPPPXGXKX--PPPPPXXPGXXGVXXXKXXGXXPXXXP 482
           G    PPP G     PPPPP  P        +     P   P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = -3

Query: 726  GGGGPPXXXXXPPXPXXXXGXPFLGPFXPXIFXXGVSPPPXXGXXXXPPPXGXXXPLPPP 547
            GG  P      PP        P +    P      V PPP        PP     PLP  
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 546  XXP 538
              P
Sbjct: 1739 SAP 1741


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 814 PPKKXPXGPPPXXPPPGPXXG 876
           PP   P   PP  PPP P  G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 536 PGXXGGGRGXFXPXGGGXXXXPXXGGG 616
           PG  GGG G F    GG    P   GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = -2

Query: 601 GXXXXPPPXGXKXPPPPPXXPGXXGVXXXKXXGXXPXXXPPXPP 470
           G    PP      PPPPP      G              PP PP
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,864
Number of Sequences: 5004
Number of extensions: 28520
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)