Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    31   0.28 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.87 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   8.1  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 341 PLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTN 487
           P+   PP DD T  +Q +T    + S+     I+G+ G  +  LR+ TN
Sbjct: 77  PISAKPPMDDATYATQQLT-LRALLSTREAGIIIGKAGKNVAELRSTTN 124


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 53   SSARCDANTRALHEQTRTLKRSNAPRLLFFYSVP 154
            S+A     TRA+ EQ +TLK++    +LF + +P
Sbjct: 1090 STALTPEETRAIQEQAKTLKKAGMDFMLFSFWLP 1123


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 56   SARCDANTRALHEQTRTLKRSNAPR 130
            SA  D++  +LH+++  L R+N+PR
Sbjct: 1029 SATLDSDKSSLHKRSAELSRNNSPR 1053


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 22  TIGNSLRFFEFLSALRREHTRP 87
           T+GN   F  +LSAL+R H+ P
Sbjct: 895 TVGNPQEFQVWLSALQRAHSYP 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,961
Number of Sequences: 5004
Number of extensions: 36231
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)