Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N22
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 94 1e-19
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 94 1e-19
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 94 1e-19
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 32 0.62
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 29 5.8
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 29 5.8
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 29 5.8
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 5.8
U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical pr... 28 7.6
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +2
Query: 329 PLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
P+ P A + RT QN+TE V VP+SEHVAEIVGRQGCKIKALRAKTNTYIKTP
Sbjct: 25 PVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 84
Query: 506 VRGEEPVF 529
VRGE+P+F
Sbjct: 85 VRGEDPIF 92
Score = 46.4 bits (105), Expect = 3e-05
Identities = 37/118 (31%), Positives = 45/118 (38%)
Frame = +3
Query: 450 KGARLKLCERRLTLTSRHR*GARSPCXVVTGRKEDVARAKREILSAG*ALFSDSXXXXXX 629
+G ++K + + P VVTGR EDV AKREI A F+
Sbjct: 66 QGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAA-EHFTQIRASRRH 124
Query: 630 XXXXXXXXGXXTVXXQVPXPTAXLGXVVEPKGXTIKXXQXXIXTYXXXPXPXRXXPVF 803
+ V P +G VV PKG TIK Q TY P R PVF
Sbjct: 125 TQVVPGAHAPGQITSYVRVPLRVVGLVVGPKGATIKRIQQDTHTYIITPSRER-EPVF 181
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 392 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF 529
+T V VP V +VG +G IK ++ T+TYI TP R EPVF
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVF 181
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +2
Query: 329 PLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
P+ P A + RT QN+TE V VP+SEHVAEIVGRQGCKIKALRAKTNTYIKTP
Sbjct: 25 PVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 84
Query: 506 VRGEEPVF 529
VRGE+P+F
Sbjct: 85 VRGEDPIF 92
Score = 46.4 bits (105), Expect = 3e-05
Identities = 37/118 (31%), Positives = 45/118 (38%)
Frame = +3
Query: 450 KGARLKLCERRLTLTSRHR*GARSPCXVVTGRKEDVARAKREILSAG*ALFSDSXXXXXX 629
+G ++K + + P VVTGR EDV AKREI A F+
Sbjct: 66 QGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAA-EHFTQIRASRRH 124
Query: 630 XXXXXXXXGXXTVXXQVPXPTAXLGXVVEPKGXTIKXXQXXIXTYXXXPXPXRXXPVF 803
+ V P +G VV PKG TIK Q TY P R PVF
Sbjct: 125 TQVVPGAHAPGQITSYVRVPLRVVGLVVGPKGATIKRIQQDTHTYIITPSRER-EPVF 181
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 392 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF 529
+T V VP V +VG +G IK ++ T+TYI TP R EPVF
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVF 181
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +2
Query: 329 PLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
P+ P A + RT QN+TE V VP+SEHVAEIVGRQGCKIKALRAKTNTYIKTP
Sbjct: 56 PVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTP 115
Query: 506 VRGEEPVF 529
VRGE+P+F
Sbjct: 116 VRGEDPIF 123
Score = 43.6 bits (98), Expect = 2e-04
Identities = 39/118 (33%), Positives = 46/118 (38%)
Frame = +3
Query: 450 KGARLKLCERRLTLTSRHR*GARSPCXVVTGRKEDVARAKREILSAG*ALFSDSXXXXXX 629
+G ++K + + P VVTGR EDV AKREI A A
Sbjct: 97 QGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCA--AEHFTQIRASRR 154
Query: 630 XXXXXXXXGXXTVXXQVPXPTAXLGXVVEPKGXTIKXXQXXIXTYXXXPXPXRXXPVF 803
G T +V P +G VV PKG TIK Q TY P R PVF
Sbjct: 155 HTQGAHAPGQITSYVRV--PLRVVGLVVGPKGATIKRIQQDTHTYIITPSRER-EPVF 209
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 392 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF 529
+T V VP V +VG +G IK ++ T+TYI TP R EPVF
Sbjct: 165 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVF 209
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 356 PPPDDRTKKSQN--MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV 508
PPP++ + QN MTE +P S+EHV++ +Q + + + I+TPV
Sbjct: 613 PPPENSQLQFQNFGMTETIPQQSNEHVSQ-QQQQIAQSRPMNLNQQQVIETPV 664
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 381 FLVRSSGGGANPSGLPSGCSPASCRPGSACSAP 283
FL S+GGG G GC C G C+ P
Sbjct: 20 FLFPSAGGGGGGGGCGGGCG-GGCGGGGGCAPP 51
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 381 FLVRSSGGGANPSGLPSGCSPASCRPGSACSAP 283
FL S+GGG G GC C G C+ P
Sbjct: 20 FLFPSAGGGGGGGGCGGGCG-GGCGGGGGCAPP 51
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 416 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
SS+ I+G+ G IK LRA+ N +++ P
Sbjct: 40 SSKSAGAIIGKGGENIKRLRAEFNAHVQVP 69
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 416 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
SS+ I+G+ G IK LRA+ N +++ P
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVP 86
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 416 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP 505
SS+ I+G+ G IK LRA+ N +++ P
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVP 86
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 471 KALILHPCRPTISATCSEDGT---GTHSV 394
+A+ HP + TI ATC+ D + GTHS+
Sbjct: 67 RAIAAHPTKSTILATCTADFSSLGGTHSI 95
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 366 SGGGANPSGLPSGCSPASCRPGSA 295
+GGG+ SG P C A C PG+A
Sbjct: 88 NGGGSEASGAPGNCE-ACCLPGAA 110
>U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical
protein C45G9.6b protein.
Length = 155
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 450 CRPTISATCSEDGTGTHSVMFCDFLVRSSGGGAN--PSGLPSGCSPAS-CRPGSAC 292
CR + T S +G V C L S+GGG N PSG GC +S C+ GS C
Sbjct: 72 CRSGLYCTASVNG-----VKIC--LSTSNGGGGNGFPSG-NGGCQTSSNCQYGSVC 119
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 450 CRPTISATCSEDGTGTHSVMFCDFLVRSSGGGAN--PSGLPSGCSPAS-CRPGSAC 292
CR + T S +G V C L S+GGG N PSG GC +S C+ GS C
Sbjct: 72 CRSGLYCTASVNG-----VKIC--LSTSNGGGGNGFPSG-NGGCQTSSNCQYGSVC 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,331
Number of Sequences: 27780
Number of extensions: 235158
Number of successful extensions: 782
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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