Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N21
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 138 3e-32
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 138 3e-32
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 138 3e-32
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 138 3e-32
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 138 3e-32
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 138 3e-32
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 138 3e-32
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 138 3e-32
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 138 3e-32
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 138 3e-32
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 138 3e-32
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 136 1e-31
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 134 3e-31
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 134 3e-31
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 134 3e-31
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 134 3e-31
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 134 3e-31
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 134 3e-31
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 134 3e-31
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 134 3e-31
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 134 3e-31
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 133 9e-31
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 127 5e-29
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 127 5e-29
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 101 3e-21
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 95 2e-19
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 95 2e-19
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 48 6e-05
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 48 6e-05
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 48 6e-05
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 48 6e-05
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 48 6e-05
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 44 7e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 7e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 7e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 44 7e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 44 7e-04
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 40 0.009
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 40 0.009
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 40 0.009
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 40 0.009
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 40 0.009
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 39 0.027
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.027
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.027
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 36 0.19
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 36 0.19
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 36 0.19
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 36 0.19
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 36 0.19
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 36 0.19
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 36 0.19
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 34 0.77
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 34 0.77
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 34 0.77
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 34 0.77
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 34 0.77
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 34 0.77
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 34 0.77
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 31 5.4
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 31 5.4
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 5.4
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 31 5.4
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 5.4
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 5.4
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 5.4
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 5.4
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 5.4
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 31 5.4
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 138 bits (333), Expect = 3e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 136 bits (329), Expect = 1e-31
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (325), Expect = 3e-31
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 133 bits (321), Expect = 9e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRG 148
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 127 bits (307), Expect = 5e-29
Identities = 59/75 (78%), Positives = 66/75 (88%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 343 GFVLLRGENIVSLTI 387
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTV 75
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 119 GLAGPVRGVGGPSQQVMTPQGRG 141
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 127 bits (307), Expect = 5e-29
Identities = 59/75 (78%), Positives = 66/75 (88%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 343 GFVLLRGENIVSLTI 387
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTV 75
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 119 GLAGPVRGVGGPSQQVMTPQGRG 141
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 101 bits (243), Expect = 3e-21
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = +1
Query: 208 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 387
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 504 GLQGPARGVGGPSQQHMAPGNRG 572
GL GP RGVGGPSQQ M P RG
Sbjct: 104 GLAGPVRGVGGPSQQVMTPQGRG 126
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 95.5 bits (227), Expect = 2e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 322 REEKRTLG 345
REEKR G
Sbjct: 101 REEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 95.5 bits (227), Expect = 2e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 322 REEKRTLG 345
REEKR G
Sbjct: 101 REEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 343 GFVLLRGENIVSLTI 387
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 343 GFVLLRGENIVSLTI 387
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 47.6 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 147
Query: 343 GFVLLRGENIVSLTI 387
G ++ G +IVS+ +
Sbjct: 148 GLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 343 GFVLLRGENIVSLTI 387
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 47.6 bits (108), Expect = 6e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 343 GFVLLRGENIVSLTI 387
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 44.0 bits (99), Expect = 7e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 346 FVLLRGENI 372
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.0 bits (99), Expect = 7e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 346 FVLLRGENI 372
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.0 bits (99), Expect = 7e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 346 FVLLRGENI 372
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 44.0 bits (99), Expect = 7e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 346 FVLLRGENI 372
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 44.0 bits (99), Expect = 7e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 346 FVLLRGENI 372
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 349 VLLRGENIV 375
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 349 VLLRGENIV 375
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 349 VLLRGENIV 375
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 349 VLLRGENIV 375
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 349 VLLRGENIV 375
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.027
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 346 FVLLRGENIV 375
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.027
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 346 FVLLRGENIV 375
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.027
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 346 FVLLRGENIV 375
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 64
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 65 RIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.19
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 346 FVLLRGENIVSL 381
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.77
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 181 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 348
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 349 VLLRGENIV 375
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.77
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 357
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 358 RGENIVSL 381
G NI L
Sbjct: 75 NGNNITML 82
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.77
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 181 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 348
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 349 VLLRGENIV 375
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.77
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 181 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 348
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 349 VLLRGENIV 375
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.77
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 357
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 358 RGENIVSL 381
G NI L
Sbjct: 75 NGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.77
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 357
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 358 RGENIVSL 381
G NI L
Sbjct: 75 NGNNITML 82
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.77
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 181 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 348
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 349 VLLRGENIV 375
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 157 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 276
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 163 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 342
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 343 GFVLLRGENIVSL 381
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,330,568
Number of Sequences: 237096
Number of extensions: 1607093
Number of successful extensions: 3846
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 3464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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