Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N21
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 124 1e-28
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 42 6e-04
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 41 0.001
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 39 0.005
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical pr... 35 0.065
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 32 0.46
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 32 0.46
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 0.80
U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine r... 28 7.5
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 7.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 7.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 9.9
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 9.9
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 9.9
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 124 bits (298), Expect = 1e-28
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = +1
Query: 142 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 321
MTI KNNKM H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K K D
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 322 REEKRTLGFVLLRGENIVSLTI 387
EEKR LG VL+RGE+IVS+T+
Sbjct: 61 GEEKRILGLVLVRGEHIVSMTV 82
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 486 PGRSTPGLQGPARGVGGPSQQHMAPGNRG 572
PG + GL G RG GGP M PG G
Sbjct: 125 PGGAPGGLSGAMRGHGGPGMAAMQPGYGG 153
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+ + ++ +RV Q R G + FD+ +N++L DC E+ + S D E R LG
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD--ETRQLG 73
Query: 346 FVLLRGENI 372
++ RG I
Sbjct: 74 LIVARGTAI 82
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 348
++ RV V +++ R G +AFD+H+N++L + EE R++ + ++ KR +
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84
Query: 349 VLLRGENIV 375
+ +RG++++
Sbjct: 85 LFVRGDSVI 93
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 166 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 345
+ ++N V V+ D R +G K FD+ +NL++ D E +++ T LG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLG 58
Query: 346 FVLLRGENI 372
++RGEN+
Sbjct: 59 LYIIRGENV 67
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 172 QHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 351
+ ++ ++ V+L+D R IG ++ D+ NLIL D E ++ +T GF+
Sbjct: 16 EQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------GFM 68
Query: 352 LLRGENI 372
L+RGEN+
Sbjct: 69 LIRGENV 75
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 178 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 357
I ++ VI+++ + +GT FD ++N++L D E+ TAD + L +LL
Sbjct: 22 IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEY-------ENTADGKRMTKLDTILL 74
Query: 358 RGENIVSL 381
G +I L
Sbjct: 75 NGNHITML 82
>Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical
protein C52E4.3 protein.
Length = 118
Score = 35.1 bits (77), Expect = 0.065
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 181 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 348
N++V + ++++ +G KAFD+H N++L + +E K K + R +
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISK 98
Query: 349 VLLRGENIV 375
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/40 (52%), Positives = 22/40 (55%)
Frame = +3
Query: 486 PGRSTPGLQGPARGVGGPSQQHMAPGNRGHFLLXLNARRP 605
PGR PG QGP RG GP+ APGN G NA RP
Sbjct: 215 PGR--PGPQGP-RGETGPAGNPGAPGNDGEAGKNGNAGRP 251
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/40 (52%), Positives = 22/40 (55%)
Frame = +3
Query: 486 PGRSTPGLQGPARGVGGPSQQHMAPGNRGHFLLXLNARRP 605
PGR PG QGP RG GP+ APGN G NA RP
Sbjct: 209 PGR--PGPQGP-RGETGPAGNPGAPGNDGEAGKNGNAGRP 245
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 486 PGRSTPGLQGPARGVGGPSQQHMAPGNRGHFLLXLNARRP 605
PGR PG GP RG GP+ Q +PGN G NA RP
Sbjct: 216 PGR--PGPPGP-RGEAGPAGQPGSPGNDGESGKPGNAGRP 252
>U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical
protein C49H3.4 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 169 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 282
Q+ I RVR ++ R F G FD+H NL++ D E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +3
Query: 498 TPGLQGPARGVGGPSQQHMAPGNRGH 575
TPG GPA G GP Q APG GH
Sbjct: 214 TPGAPGPA-GPAGPQGQPGAPGQPGH 238
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 480 HWPGRSTPGLQGPARGVGGPSQQHMAPGNRG 572
H G+ PG GPA G P Q APGN G
Sbjct: 162 HGGGQGPPGPPGPAGDAGSPGQAG-APGNPG 191
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 489 GRSTPGLQGPARGVGGPSQQHMAPGNRG 572
G+ PG GPA G P Q APGN G
Sbjct: 167 GQGPPGPPGPAGSAGSPGQAG-APGNPG 193
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 489 GRSTPGLQGPARGVGGPSQQHMAPGNRG 572
G+ PG GPA G P Q APGN G
Sbjct: 167 GQGPPGPPGPAGSAGSPGQAG-APGNPG 193
>AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine
receptor, class z protein83 protein.
Length = 314
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -1
Query: 186 IINMLLHLIVFADRHFIGVIRKILLDIWKASICFSDIHLTVAF 58
I++ LLH+I H I +IR +++ I+ A +CF+ HLT AF
Sbjct: 79 ILHTLLHVI-----HEIVIIRFLIVVIFYA-LCFTMYHLTKAF 115
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 489 GRSTPGLQGPARGVGGPSQQ-HM-APGNRG 572
GR PG +GPA G P Q H +PGN G
Sbjct: 165 GRGPPGPRGPAGDAGSPGQPGHPGSPGNPG 194
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 489 GRSTPGLQGPARGVGGPSQQ-HM-APGNRG 572
GR PG +GPA G P Q H +PGN G
Sbjct: 165 GRGPPGPRGPAGDAGSPGQPGHPGSPGNPG 194
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 550 CC*DGPPTPLAGP*RPGVLRPGQ 482
CC GPP P P +PG RPG+
Sbjct: 99 CCLPGPPGPAGTPGKPG--RPGK 119
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 550 CC*DGPPTPLAGP*RPGVLRPGQ 482
CC GPP P P +PG RPG+
Sbjct: 99 CCLPGPPGPAGTPGKPG--RPGK 119
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 550 CC*DGPPTPLAGP*RPGVLRPGQ 482
CC GPP P P +PG RPG+
Sbjct: 99 CCLPGPPGPAGTPGKPG--RPGK 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,681
Number of Sequences: 27780
Number of extensions: 236067
Number of successful extensions: 774
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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