Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N17
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   3.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   6.3  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   8.4  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   8.4  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 500 RKKAKGKSPTTALKNPT*PSRSATKTWPILYPGN*TLRRRSSK 628
           R+K  G S TTA   P  PS+ +++  P+L   +  L R  S+
Sbjct: 232 RRKDSGSSKTTATYIPHNPSKKSSQHLPLLPDASFELERSVSR 274


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 VKDSQT*RRTMWPPSPTTRKALRSSNT*RSLXEAMQTDQDNLIEKVRGI 441
           ++ SQT   +  PPSP T+K+ +   T  S   A+  ++   I K + +
Sbjct: 126 IEASQTEESSSTPPSPATKKSSKQRLTMNSRDAALDYEEYLAIAKEKSL 174


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 348 PEGFKVFKYMKILXRGHANRPGQLD 422
           P+GF +F Y++ L    A  P ++D
Sbjct: 348 PDGFPIFAYVRALYAYKATLPSEID 372


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 718 SDRLDPAGGLTLQISQLHSQPHVALDLDLSLGRTP 614
           ++ LDPA  L+ +++  H  P  A  +D+S+   P
Sbjct: 241 TNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQP 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,662
Number of Sequences: 5004
Number of extensions: 68706
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)