Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N17
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720... 49 6e-06
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 48 8e-06
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 46 3e-05
11_01_0551 + 4361640-4363386,4363443-4363687 31 1.2
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 31 1.2
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 29 3.8
08_01_0316 + 2802057-2802474,2802575-2802712,2802803-2802891,280... 29 6.7
03_01_0318 - 2495617-2497788 29 6.7
10_01_0041 + 505155-506339 28 8.8
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 28 8.8
>02_05_0855 -
32271631-32271712,32271823-32271922,32272012-32272072,
32272169-32272294
Length = 122
Score = 48.8 bits (111), Expect = 6e-06
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 418 LIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADLI 591
L+EK+ +Y + E +V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEKIGFVYQLNISPKKLAFDEEVFVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAIS 84
Query: 592 SGKLNPQKAFFQGK 633
SGKLNPQ AF GK
Sbjct: 85 SGKLNPQMAFIMGK 98
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 48.4 bits (110), Expect = 8e-06
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Frame = +1
Query: 355 ALRSSNT*RSLXEAMQTDQD-NLIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVT 525
+L+S+ + M TD ++ +KV +Y F + G E +V++ K+G+ K
Sbjct: 5 SLKSAQLLEQMRLHMATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGP 64
Query: 526 YNGSEKPDVTFTISDEDVADLISGKLNPQKAFF-------------QGKDQDPGQHGAGY 666
Y G KPD TF+ +D D + +GK+NPQ AF Q +D+D G+H G
Sbjct: 65 YEG--KPDATFSFTDSDFLSIATGKMNPQIAFIRFCRWLMNYENCVQRRDKDQGEHKRGA 122
Query: 667 E 669
E
Sbjct: 123 E 123
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 418 LIEKVRGIYGFKVRNGPDG--AEGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADL 588
L+E + +Y + G E + V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEMIGFVYQLNISPKKLGFDEEVFIVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAI 84
Query: 589 ISGKLNPQKAFFQGK 633
SGKLNPQ F GK
Sbjct: 85 SSGKLNPQMVFIMGK 99
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Frame = +1
Query: 481 GYWVINAKEGKGKVTYNGSEKPDVTFTISDED------------VADLISGKLNPQKAFF 624
G W+I++ E N S+KPDV + +ED A++++ +A
Sbjct: 30 GLWMISSPETIPAAAANVSKKPDVV-AVKEEDSSLDATNNVKQNSANVVAETAAADEAAA 88
Query: 625 QGKDQDPGQHGAGYEAD*FAASSRRQDRDD 714
+D +P + AG +A AASS+ Q DD
Sbjct: 89 ADEDDNPAKPAAGEKAAAAAASSKDQTFDD 118
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 436 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGK 600
G+ G K+ A W +A++G G+ Y GS PD F D D ++ K
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGFLGGGRDGGDFVNLK 156
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -1
Query: 230 WHLTVDDRRAGTLNPN*SAGGIVYSLSY*YG-KINLISRDNNKYLRMSTERPSKSNFAAT 54
W +T D+ G NP+ G +YS G K+ + RD + R R N A
Sbjct: 375 WSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSRAF 434
Query: 53 ESKNL 39
E+ L
Sbjct: 435 EAAAL 439
>08_01_0316 +
2802057-2802474,2802575-2802712,2802803-2802891,
2803711-2803980,2804063-2804193,2804364-2804481,
2804561-2804650,2804731-2804799,2804846-2804854,
2804903-2804980,2805249-2805303,2805810-2806003
Length = 552
Score = 28.7 bits (61), Expect = 6.7
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +2
Query: 428 KSAGSTVSRSETVQTAPRV-TGSSMRKKAKGKSPTTALKNPT*PSRSATKTWPILYPGN* 604
+SA S + PRV +GSS + K K TTA+ +R A++ P YP
Sbjct: 47 RSARSHLGLDSDSTDHPRVVSGSSDQPPKKRKKTTTAVAAAAGSTRLASRPVPGRYPDYP 106
Query: 605 TLR----RRSSKGKIKIQGNMGLAMKLTDLQRQAAGR-IETIR 718
+LR S K +Q M +++ L++QA I T+R
Sbjct: 107 SLRPGQHALSKKHMSAVQEWMEECSRISKLEKQARPEDIPTLR 149
>03_01_0318 - 2495617-2497788
Length = 723
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 104 IYYYLEILSLSCRISNSRSRLYHQRINSDSEFR 202
++Y++++LS S ++ S RL HQR ++ R
Sbjct: 136 VFYWMQLLSASACVALSLVRLVHQRYGGSADAR 168
>10_01_0041 + 505155-506339
Length = 394
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 759 TNSDPRTYSVYSLDRIVSILPAA*RCKSVSFIASPMLPWILIFPLEER 616
TN D +S ++ ++ +C++ + +ASP P IL+F + R
Sbjct: 192 TNDDGGQHSTTTITAFEAVAAVLWKCRTRAVMASPEAPAILVFVVNAR 239
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 383 PXKRPCKPTRTT*SRKSAGSTVSRSETVQTAPR 481
P +R C R T +R+++GS++ R+ T+PR
Sbjct: 230 PSRRGCLSWRPTMTRRASGSSLRRAPPPPTSPR 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,609,142
Number of Sequences: 37544
Number of extensions: 491537
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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