Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N16
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    80   5e-16
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    28   1.5  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    27   3.5  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 79.8 bits (188), Expect = 5e-16
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
 Frame = +2

Query: 182 EDFNKFLDSFDHVLSDCDGVIWT-QNPLPRVGEFFKQMKKRGKTVNFVSNNSIRSRANYE 358
           +++ +F+D FD  L DCDGV+W+   P+P V +  K ++  GK + FVSNNS +SR  Y 
Sbjct: 9   KEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYM 68

Query: 359 AQFKAAGIDNGFESLIIPSIAVAEYLKSA---TFNKTVYCVTCTETKRVLEAHGFKCKEG 529
            +    GI    E +   + + A Y+K       +K V+ +     +  L+  G     G
Sbjct: 69  NKINEHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHIGG 128

Query: 530 --PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFRINLPKMYRAITYLKRPEVLFI 685
             P L      E ++ +  D  +GAV+   D  +   K   A  YL+ P   F+
Sbjct: 129 TDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFL 182


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 760 SSTGSRFTSAVTRSAKTPVPISRSIYEEDLRSFQVSYGSVHFRQVYPKIAVKNDGSYLFI 581
           SS+  R +S     ++T + ++ S +  D RSF     +VH  +V  KIA + D   L +
Sbjct: 54  SSSSHRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERV-EKIASEWDPEGLRV 112

Query: 580 VF 575
            F
Sbjct: 113 CF 114


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 757 STGSR--FTSAVTRSAKTPVPISRSIYEEDLRSFQVSYGSVHFRQVYPKIAVKNDGSYLF 584
           S+GS+  F   V+ + K P P + S     ++    +  SV+ R  YP +A K +GSYLF
Sbjct: 12  SSGSQIAFRRFVSLTHKDPTPDTTSC--NIIKKEGANIISVYAR--YPVVAAKGEGSYLF 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,784
Number of Sequences: 5004
Number of extensions: 67699
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)