Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N16
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 86 4e-17
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 73 2e-13
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 51 1e-06
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 4.8
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 29 4.8
01_06_1292 - 36037741-36039306 28 8.5
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 28 8.5
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 85.8 bits (203), Expect = 4e-17
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 26/250 (10%)
Frame = +2
Query: 179 VEDFNKFLDSFDHVLSDCDGVIWTQNPL-PRVGEFFKQMKKRGKTVNFVSNNSIRSRANY 355
+E+ + +DS + + DCDGVIW + L V E ++ +GK + FV+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 356 EAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NKTVYCVTCTETKRVLEAHGFKCKEG 529
+F+ G++ E + S A A YL+S F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 530 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFRINLPKM-YRAITYLKRPEVLF 682
P G + G Y+++ +D I GAVV D N K+ Y + + P LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251
Query: 683 INGATDRDR--------------SLCRPGYGRSETRARAAGKPGKAFGEFAMKRAGITDP 820
I AT+RD S+ G ++ GKP ++ K+ GIT
Sbjct: 252 I--ATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT-T 308
Query: 821 SRVLFIGDMI 850
S++ +GD +
Sbjct: 309 SQICMVGDRL 318
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 73.3 bits (172), Expect = 2e-13
Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Frame = +2
Query: 200 LDSFDHVLSDCDGVIWTQNPLPR-VGEFFKQMKKRGKTVNFVSNNSIRSRANYEAQFKAA 376
+DS D L DCDGVIW + L V E ++K GK + FV+NNS +SR Y +F+A
Sbjct: 19 VDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRRQYAKKFRAL 78
Query: 377 GIDNGFESLIIPSIAVAEYLKSATFN--KTVYCVTCTETKRVLEAHGFKCKEGP 532
G++ E + S A A +LK F+ K VY V L GF+C GP
Sbjct: 79 GLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECLGGP 132
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 284 KQMKKRGKTVNFVSNNSIRSRANYEAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NK 457
+ + +GK + FV+NNS +SR Y +F+ G++ E + S A YL+S F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 458 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 601
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.1 bits (62), Expect = 4.8
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 281 FKQMKKRGKTVNFVSNNSIRSR-ANYEAQFKAAGIDNGFESLIIPSIAVAEYLK---SAT 448
F++M ++ NF NS + R A + K AG+ + + I +A K S T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266
Query: 449 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 553
++ + V CT+ +RV E + KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +2
Query: 404 IIPSIAVAEYLKSATFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 577
++PS+ Y F++T+Y + C+ ++KRV++ K E L E + + E
Sbjct: 24 VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77
Query: 578 DDEEIGAVVFDSDFRINLPKMYRAITYLKRPEVLFINGATD 700
+D+ G + D +N+ I R ++F+NG+ D
Sbjct: 78 EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDD 118
>01_06_1292 - 36037741-36039306
Length = 521
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 847 HVTDKKNSTRIGDAGSLHSEFTESFSWLPSSTGSRFTSAVTRSAKTPVPISRSIYEED 674
H D++ + G + E S + S F S V + A+ PV ++SIYE+D
Sbjct: 340 HAMDEECFLPLNSCGERTQQDVEMHSVVQPSWQHEF-SGVMKKARGPVTAAKSIYEDD 396
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 805 GSLHSEFTESFSWLPSSTGSRFTSAVTRSAKTPVPISRSIYE 680
GS + E F+ P+S + AV+ A TP +S S Y+
Sbjct: 560 GSSDAVVQEPFATTPTSPAALAAGAVSNPALTPAAVSMSFYD 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,494,873
Number of Sequences: 37544
Number of extensions: 403115
Number of successful extensions: 1002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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