Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N12
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   101   5e-22
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   1.2  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   8.1  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  101 bits (243), Expect = 5e-22
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +1

Query: 130 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 297
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 190 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 291
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 190 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 291
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 177 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 278
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 290
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical
           protein R03H10.6 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 175 VRICEGENTKYLRGPF*EIKLFXANEQQIRXHLQDGE-LERKPKVLRNAXVVE 20
           V +C  +N +Y R P   I +  A E+ I   L D   +E KP VLRN  V++
Sbjct: 234 VMLCNVQNEQYYRKP---IDVIVAVEE-INDFLDDYHPIENKPPVLRNMVVID 282


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 189 MPILLQQAWLNPQVRFEHMQTVLQRV 266
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,863
Number of Sequences: 27780
Number of extensions: 160350
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)