Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N10
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.040
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    31   0.28 
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    30   0.49 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    29   1.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    28   2.0  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   3.5  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   6.1  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   8.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   8.0  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   8.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   8.0  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   8.0  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 678 LDHSGRYLXLGLPQVANLXFPAGSPDDDGRXSKKVRXPEKDRSGQRGMAQWS 833
           L H+     + LPQ  +  FP   P+DDG  S  V    K+ +  +  A+W+
Sbjct: 309 LTHANSKRSIMLPQDIDPTFPDSEPEDDGHASSTVGSLSKEEARFKAKAKWN 360


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +1

Query: 319  PILDMSENGQCQQLQEWEATRLQPSLSAALGK------SPASDVKQVLKSSLEHVNGLLE 480
            P+L M EN     + E   T L  SL   LGK      S   D+ +VL++   H   L E
Sbjct: 965  PLLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPE 1024

Query: 481  GHQYVLGD 504
              + VLGD
Sbjct: 1025 SVRRVLGD 1032


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 451 SLEHVNGLLEGHQYVLGDKISAADISIWSTLYPLTHNDDLREQYLKELGNIRRW 612
           SL+  N L++   Y++GD+ + AD+  + +L  +  N  + E+  KEL ++ R+
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADL-FFGSLLRIFFNSIIDEKTRKELPHLTRY 193


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 256 LLEVDPELRFFSSNAAVQY-LFPILDMSENGQCQQLQEWEATRLQPSLSAALG 411
           LL+V P+    S  + V+Y L+   D  +N   +  + W A   QP L +ALG
Sbjct: 246 LLDVRPDKIAPSLGSIVEYMLYSTQDSDQNVALEACEFWLAIAEQPDLCSALG 298


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 571 REQYLKELGNIRRWSDAIGGAKSVQEAVRQWGR 669
           R+  +KELG    W    GG   V E  + WGR
Sbjct: 555 RKMMVKELGYFHVWFSIDGGYGHVVEDEKAWGR 587


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 568 LREQYLKELGNIRRWSDAIGGAKSVQEAVRQWGRFANWTIRADIXTWAYH 717
           LRE +L+E+G   +  DA G  + + E + +    + + +      W YH
Sbjct: 253 LRETHLEEIGVFEKGMDAAGFERQMGEEIGEEDFGSLYPVTCRWSRWKYH 302


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 292 SNAAVQYLFPILDMSENGQCQQLQEWEATRLQPSLSAALGKSPASDVKQVLKSS 453
           S  A++ L P+L  S +G    + EW A  +    +  LG +P +    +L S+
Sbjct: 306 SRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSILLTST 359


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 562  DDLREQYLKELGNI-RRWSDAIGGAK 636
            DDL  QY K++G++  ++ + +GGA+
Sbjct: 1060 DDLYRQYQKKIGSVLTQFDNTVGGAR 1085


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 510 DFVPENVLVAFQQSVNVF 457
           DF+P+N+ + FQ   N+F
Sbjct: 99  DFIPKNIFLQFQNVANLF 116


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 223 DDVFAGPRQLPLLEVDPELRFFSSNAAVQYLFPI 324
           +++F G + +  LE+  EL     N++  YL P+
Sbjct: 434 ENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPV 467


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 857 STEPAXXSRPLSHPSLXASIFFRXSDLLGPSAIVIRR--PCRKL 732
           S  P   +  L +P+L  S     S LL PS+ ++RR  P  KL
Sbjct: 564 SGAPVLDTSSLVNPTLAKSASLNNSSLLNPSSSLLRREVPAGKL 607


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 720 PVVSPGXDICPNGPVGEPPPLSHSFLNRFRTSNSVRPTPYITELLQILFS 571
           PV   G DI P      PP  SH  L   + S   +PTP     + I+ S
Sbjct: 157 PVEVSGGDIEPVNEFTSPPLNSH-LLQNIKLSGYTQPTPVQKNSIPIVTS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,327
Number of Sequences: 5004
Number of extensions: 66413
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)