Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N06
(923 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.033
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.30
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.53
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.008
Identities = 33/130 (25%), Positives = 35/130 (26%), Gaps = 6/130 (4%)
Frame = +1
Query: 550 PPPPPXXKPXXPXXGGGGGXXXPPXGXGXAXPPKXGRXPGXXPXGPXPRRGXXXTXXXXX 729
PPPPP P G PP G PP P P +
Sbjct: 337 PPPPPP-----PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP--- 388
Query: 730 GXXTPXPPPPXXXLX-PXXPPXGGGX-----PPPAXXXXPEAXPPXXPPXGAGXXPXXXG 891
P PPP P PP G P P P + PP PP P
Sbjct: 389 ----PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 892 XXGXPPPVXP 921
PP P
Sbjct: 445 AAPPLPPSAP 454
Score = 31.9 bits (69), Expect = 0.13
Identities = 41/167 (24%), Positives = 41/167 (24%), Gaps = 6/167 (3%)
Frame = +1
Query: 430 PPPXXRPFXXXGXGGXGXLFFXXXXXXXXXRGRAGXVXPXPPPPPXXKPXXPXXGGGG-G 606
PPP R G G R A P PP P P G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 607 XXXPPXGXGXAX---PPKXGRXPGXXPXGPXPRRGXXXTXXXXXGXXTPXPPPPXXXLXP 777
PP A P PG P T PP L P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Query: 778 XXPPXGGGXPPPAXXXXPEAXPPXXPPXGAG--XXPXXXGXXGXPPP 912
PP P A P A P PP AG P PPP
Sbjct: 434 SAPPSLPMGAPAAPPLPPSA--PIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = +1
Query: 742 PXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPP--XGAGXXPXXXGXXGXPPPV 915
P PPPP PP G G PP PP AG P PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG------SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 916 XP 921
P
Sbjct: 365 PP 366
Score = 29.9 bits (64), Expect = 0.53
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Frame = -3
Query: 492 KKKXPXPPPPXXXKXXXXXXG------XXXXPPXPGAXNTPSDPPXPXKXXFSXPXGXXG 331
KK+ P PPPP G PP P N P P P G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP-------PQGRSA 360
Query: 330 XPPPPXXAXXXAG 292
PPPP + G
Sbjct: 361 PPPPPPRSAPSTG 373
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.008
Identities = 30/130 (23%), Positives = 32/130 (24%), Gaps = 6/130 (4%)
Frame = +1
Query: 550 PPPPPXXKPXXPXXGGGGGXXXPPXGXGXAXPPKXGRXPGXXPXG--PXPRRGXXXTXXX 723
P P P P P P G P P P G P P+
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 724 XXGXXTPXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXP----PXXPPXGAGXXPXXXG 891
P P P + P PP P P P P P AG P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Query: 892 XXGXPPPVXP 921
PP P
Sbjct: 1233 TAKAPPVPAP 1242
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +2
Query: 746 PXPPPXQXXPPXXPPXGGGPXPRPXXXXRRRXPPXXPPXGXGXFPXXXXGXDXXP 910
P P P PP PP P P+P PP PP P G P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVG----VPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +2
Query: 734 VXPXPXPPPXQXXPPXXPPXGGGPXPRPXXXXRRRXPPXXPPXGXGXFP 880
V P P P PP P G P P+P PP P G P
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVPKPSV----AAPPVPVPSGAPPVP 1143
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 746 PXPPPXQXXPPXXPPXGGGPXPRPXXXXRRRXPPXXPPXGXGXFP 880
P P P PP P G P P+P PP P G P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSV----AAPPVPAPSGAPPVP 1162
Score = 27.5 bits (58), Expect = 2.8
Identities = 24/92 (26%), Positives = 24/92 (26%), Gaps = 6/92 (6%)
Frame = +1
Query: 664 PGXXPXGPXPRRGXXXTXXXXXGXXTPXPPPPXXXLXPXXPPXGGGXPPPAXXXXPE--- 834
P P P P P P P P P G P PA P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 835 ---AXPPXXPPXGAGXXPXXXGXXGXPPPVXP 921
A PP P A P G PP P
Sbjct: 1097 PSVAAPPVPKPSVA--VPPVPAPSGAPPVPKP 1126
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +2
Query: 746 PXPPPXQXXPPXXPPXGGGPXPRPXXXXRRRXPPXXPPXGXGXFPXXXXGXDXXP 910
P P P PP P G P P+P P P G P G P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSV---AAPPVPAPSSGIPPVPKPAAGVPPVP 1192
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.033
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 742 PXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPP 858
P P P + P P GG PPP A PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/61 (36%), Positives = 24/61 (39%)
Frame = +1
Query: 739 TPXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPPXGAGXXPXXXGXXGXPPPVX 918
+P PPPP + P P PPPA PP PP AG P PPP
Sbjct: 731 SPPPPPP-AVIVPTPAPAPIPVPPPAPIMG-GPPPPPPPPGVAGAGPP------PPPPPP 782
Query: 919 P 921
P
Sbjct: 783 P 783
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = -3
Query: 486 KXPXPPPPXXXKXXXXXXGXXXXPPXPGAXNTPSDPPXPXKXXFSXPXGXXGXPPPP 316
K P PPPP PP P P PP P P PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 538 VXPXPPPPPXXKPXXPXXGGGGGXXXPPXGXGXAXPP 648
+ P P P P P GG PP G A PP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -3
Query: 417 PPXPGAXNTPSDPPXPXKXXFSXPXGXXGXPPPPXXAXXXAG 292
PP P A P+ P P P PPPP AG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +3
Query: 747 PXP-PXXXAXPXXTPPGGGXPXPGXXXXXGGXXPXXPPPGGXXXSPXXXXGXTPXP 911
P P P P P GG P P G P PPP S P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = -1
Query: 668 PGXRPXLGGXAXPXPXGG--XXXPPPPP 591
P P +GG P P G PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.30
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +1
Query: 664 PGXXPXGPXPRRGXXXTXXXXXGXXTPXPPPPXXXLXPXX-PPXGGGXPPPAXXXXPEAX 840
P P P P+ P P P P PP PPPA P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 841 PPXXPPXGAGXXPXXXGXXGXPPPV 915
PP P + P PPP+
Sbjct: 184 PPSAPSLPSAVPPMPPKV--PPPPL 206
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 417 PPXPGAXNTPSDPPXPXKXXFSXPXGXXGXPPPP 316
PP P + P+ P P K S P PP P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/60 (23%), Positives = 16/60 (26%)
Frame = +1
Query: 742 PXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPPXGAGXXPXXXGXXGXPPPVXP 921
P PP + P P P A PP P P PP+ P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +2
Query: 740 PXPXPPPXQ-XXPPXXPPXGGGPXPRPXXXXRRRXPPXXPPXG 865
P P PPP PP PP GP P P P G
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +1
Query: 742 PXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPPXGAGXXP 879
P PPPP + P PP PP P A PP P A P
Sbjct: 1705 PTPPPPPMSVPP--PPSA----PPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 742 PXPPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPP 858
P P P PP PPP A PP PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 784 PPXGGGXPPPAXXXXPEAXPPXXPPXG 864
PP PPP P + PP PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 740 PXPXPPPXQXXPPXXPPXGGGPXPRPXXXXRRR 838
P P PPP PP PP P P P +R+
Sbjct: 9 PPPPPPPPGFEPPSQPP----PPPPPGYVKKRK 37
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.1
Identities = 34/105 (32%), Positives = 34/105 (32%)
Frame = -1
Query: 857 GGXXGGXASGXXXXAGGGXPPPXGGXXGXSXXXGGGGXGVXXPXXXXXVFXXPRRGXGPX 678
GG GG G GG PP GG G G GG G G GP
Sbjct: 187 GGGFGGFGGG-----SGGPPPGPGGFGGFG---GFGGEGHHHGGHGGF-------GGGPG 231
Query: 677 GFXPGXRPXLGGXAXPXPXGGXXXPPPPPXXGXXGXXXGGGGGXG 543
GF G GG P GG G G GG GG G
Sbjct: 232 GFEGGPGGFGGG---PGGFGGGLG----GFGGGPGGFGGGPGGHG 269
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -1
Query: 920 GXTGGGXPXXPXXXGXXPAPXGGXXGGXASGXXXXAGGGXPPPXGGXXGXSXXXGGGGXG 741
G GGG P G G G G GGG GG G GG G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 740 V 738
+
Sbjct: 251 L 251
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.7
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +1
Query: 748 PPPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPPXGAGXXPXXXGXXGXPPPV 915
PPPP P P G PP A A PP PP GA G G P PV
Sbjct: 1882 PPPPP----PMALPKAG--PPSAAPT--SALPPAGPPAGA---TAISGNPGMPAPV 1926
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,556
Number of Sequences: 5004
Number of extensions: 33402
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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