Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N06
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   5.2  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   5.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 644  GXAXPXPXGGXXXPPPPP 591
            G A   P  G   PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPP 1863


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
 Frame = +1

Query: 544 PXPPPPPXXKPXXPXXGG-GGGXXXPPXGXGXAXPP 648
           P P P P   P  P  G        PP G     PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 751 PPPXXXLXPXXPPXGGGXPPPAXXXXPEAXPPXXPP 858
           P P     P  P  G   PP      P   PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 621 PXXGXGPXPQXGPXPGXKXXGP 686
           P  G  P P  GP PG     P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 700 PAGGRGPXXFXPGXGPF 650
           P  GR P    PG GPF
Sbjct: 27  PQPGRRPFPTFPGQGPF 43


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 700 PAGGRGPXXFXPGXGPF 650
           P  GR P    PG GPF
Sbjct: 13  PQPGRRPFPTFPGQGPF 29


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 700 PAGGRGPXXFXPGXGP 653
           P   RGP  F PG  P
Sbjct: 42  PRSNRGPVLFPPGPPP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,046
Number of Sequences: 438
Number of extensions: 8681
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)