Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N05
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    32   0.13 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   3.8  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    27   5.0  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = +3

Query: 228 IFVIILLCFAACL--CERGDYIGCYVLKAEEV-LNTHTGQSVDACLNACEQVHYKYALIG 398
           +F + LL  +  L   +     GCY++ +      T T      C N         A + 
Sbjct: 14  LFFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGTFTYLDPAYCYNNICGGSDNIAFVA 73

Query: 399 -NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCGGNNATSVYDT 530
              + C+CG++    ++    C T CP   +  CGG+   SVY T
Sbjct: 74  IRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGGDLYWSVYLT 118


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 399 NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCG 500
           + S+C   +S  +  LP D+  T CPK     CG
Sbjct: 84  SNSSCSIPSSISEKLLPRDNVKTHCPKRSASCCG 117


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +3

Query: 213 KWFQRIFVIILLCFAACLCERGDYIGCYVLKAEEVLNTHTGQSVDACLNACEQVHYKYAL 392
           K  + +F  +++    CLCE  D+  C +L  +  +N    +SV+             A 
Sbjct: 106 KEIRHLFPELVVACDVCLCEYTDHGHCGLLYEDGTIN--NAKSVERIAEVSGNYALAGAQ 163

Query: 393 IGNESTCFCGNSPG-KFKL-PLDSCHTVC 473
           I + S C  G     K KL  L+  H VC
Sbjct: 164 IISPSDCMDGRVKAIKQKLVELELSHKVC 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,535
Number of Sequences: 5004
Number of extensions: 55641
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)