Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N05
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     30   3.0  
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    28   9.2  

>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
 Frame = +3

Query: 174 MVMIRNCGLETMEKWFQRIFVIILLCFAACLCERGDYIGCYVLKAEEVL-NTHTGQSVDA 350
           M ++   G E++E+W+ R ++   LC      E    +G +  + E +L + H    V  
Sbjct: 288 MWLLERDGCESLERWYCRFYLTTRLCM-----EVQQVVGPHFTQGEHILAHRHGSLYVHR 342

Query: 351 CLNACEQVHYKYALIG-----NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCGGNNAT 515
           C+++  +     A I      +E    CG++            T  P N  Q  GG+   
Sbjct: 343 CVSSATRPQCSVAQIHEHWPYHEPMFTCGHASN--IRAFSYIETTEPLNVYQCNGGSKIG 400

Query: 516 SVYDTD-VVAPGQPSNL 563
           SV + D  +A G+ ++L
Sbjct: 401 SVVNNDEEMATGKTTSL 417


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 477 KNETQKCGGNNATSVYDTDVVAPGQPSNLV 566
           +N  QK G   A+  YD D  AP QPS+++
Sbjct: 889 RNLCQKVGITIASRKYDLDAAAPFQPSDIL 918


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,560,498
Number of Sequences: 37544
Number of extensions: 350322
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)