Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N05
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY241928-1|AAO85277.1| 806|Caenorhabditis elegans xylosyltransf... 33 0.22
AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide O-xyl... 33 0.22
AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulv... 33 0.22
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 33 0.38
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 33 0.38
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 33 0.38
Z79756-11|CAB02119.2| 614|Caenorhabditis elegans Hypothetical p... 31 1.2
Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical p... 30 2.7
Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical pr... 30 2.7
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 29 3.6
>AY241928-1|AAO85277.1| 806|Caenorhabditis elegans
xylosyltransferase protein.
Length = 806
Score = 33.5 bits (73), Expect = 0.22
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = +3
Query: 285 IGCYVLKAEEVLNTHTGQSVD------ACLNACEQVHYKYALIGNESTCFCGNSPGKFKL 446
IGC++ K E + T + C C + + Y + CFCGN
Sbjct: 113 IGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNATA 172
Query: 447 PLD-SCHTV-CPKNETQK--CGGNNATSVYDT 530
D C CP NE + CGG NA ++ T
Sbjct: 173 VDDVECRAYKCPGNENSEEFCGGFNAVEIFRT 204
>AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide
O-xylosyltransferase protein.
Length = 806
Score = 33.5 bits (73), Expect = 0.22
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = +3
Query: 285 IGCYVLKAEEVLNTHTGQSVD------ACLNACEQVHYKYALIGNESTCFCGNSPGKFKL 446
IGC++ K E + T + C C + + Y + CFCGN
Sbjct: 113 IGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNATA 172
Query: 447 PLD-SCHTV-CPKNETQK--CGGNNATSVYDT 530
D C CP NE + CGG NA ++ T
Sbjct: 173 VDDVECRAYKCPGNENSEEFCGGFNAVEIFRT 204
>AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulva
protein 6 protein.
Length = 806
Score = 33.5 bits (73), Expect = 0.22
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = +3
Query: 285 IGCYVLKAEEVLNTHTGQSVD------ACLNACEQVHYKYALIGNESTCFCGNSPGKFKL 446
IGC++ K E + T + C C + + Y + CFCGN
Sbjct: 113 IGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNATA 172
Query: 447 PLD-SCHTV-CPKNETQK--CGGNNATSVYDT 530
D C CP NE + CGG NA ++ T
Sbjct: 173 VDDVECRAYKCPGNENSEEFCGGFNAVEIFRT 204
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 543 PGQPSNLVLFNATETTVRLRWSAPDAYSF--ITSYVIR 650
P P+ ++ N T+T V L W+AP IT Y+I+
Sbjct: 531 PSSPTQPIIVNVTDTEVELHWNAPSTSGAGPITGYIIQ 568
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 543 PGQPSNLVLFNATETTVRLRWSAPDAYSF--ITSYVIR 650
P P+ ++ N T+T V L W+AP IT Y+I+
Sbjct: 531 PSSPTQPIIVNVTDTEVELHWNAPSTSGAGPITGYIIQ 568
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 543 PGQPSNLVLFNATETTVRLRWSAPDAYSF--ITSYVIR 650
P P+ ++ N T+T V L W+AP IT Y+I+
Sbjct: 531 PSSPTQPIIVNVTDTEVELHWNAPSTSGAGPITGYIIQ 568
>Z79756-11|CAB02119.2| 614|Caenorhabditis elegans Hypothetical
protein F53C11.6 protein.
Length = 614
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 540 APGQPSNLVLFNATETTVRLRWSAP 614
AP P +L+ +AT +V LRWSAP
Sbjct: 391 APDPPRHLIASHATADSVMLRWSAP 415
>Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 685 LRCIRIVSITAARITYEVMKEYASGADQRSLTV 587
++C+ V++TA ++ +E+ EY +G + S TV
Sbjct: 727 IKCLDGVTVTAPKVLFEIYSEYDAGRRRHSETV 759
>Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 685 LRCIRIVSITAARITYEVMKEYASGADQRSLTV 587
++C+ V++TA ++ +E+ EY +G + S TV
Sbjct: 727 IKCLDGVTVTAPKVLFEIYSEYDAGRRRHSETV 759
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +3
Query: 396 GNESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCGGNNATSVYDTDVVAPGQPSNLVLFN 575
G T +P + D + PK + G NA+SV + A ++ L
Sbjct: 10 GKWDTYKAEEAPSLYSGNADKETSSVPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKG 69
Query: 576 ATETTVRLRWSAPDAYSFITSY 641
+ T R W APD + F+ S+
Sbjct: 70 --DFTARPLWVAPDGHIFLESF 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,675
Number of Sequences: 27780
Number of extensions: 327819
Number of successful extensions: 845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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