Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N05
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.32 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.97 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 501  GNNATSVYDTDVVAPGQPSNLVLFNATETTVRLRWSAP-DAYSFITSYVI 647
            G++ TS+       P  P  L + + +  +V+L W+AP D  S I  YVI
Sbjct: 862  GSDDTSINMIVQEVPEVPYGLKVLDKSGRSVQLSWAAPYDGNSPIKRYVI 911



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 423  NSPGKFKL-PLDSCHT-VCPKNETQKCGGNNATSVYDTDVVAPGQPSNLVLFNATETTVR 596
            N  G F L P  + H  +  +NE      ++  ++   +    G P+++ + +  + T++
Sbjct: 935  NVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIRVDDLDQHTLK 994

Query: 597  LRWSAP 614
            + W  P
Sbjct: 995  VTWKPP 1000


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 543 PGQPSNLVLFNATETTVRLRWSAP 614
           P  P NL +    ++TV L W+AP
Sbjct: 318 PSAPQNLTVNFVDQSTVFLSWNAP 341


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 611 SRPTQSH--CSLCGVK*DQIAWLTWSDHIRIIY 519
           SRP +S    S  G+   ++  L W DH  I+Y
Sbjct: 48  SRPRESAQTTSKAGIHRKKVLLLVWWDHKGIVY 80


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 170 INGYD*KLRPGNNGE 214
           ++GYD +LRP   GE
Sbjct: 45  LDGYDIRLRPNFGGE 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,172
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)