Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N04
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.16 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.65 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.86 
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    29   1.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.5  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   3.5  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.0  

>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 583 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 747
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  EM
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 520 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 636
           NG+  V+N W+L NG  I +   +A++   +K+ T   K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +1

Query: 610 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 744
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +1

Query: 106 CVFYLKIQLVIKFTNVVLIYLNXLIIMQQFTLIFVVHLTALFASTACIDYDGFL---NMK 276
           C+   K++    ++ V+L     L  ++ FT  FV+ L A + +TAC    G+L     +
Sbjct: 113 CILNYKLEWT--YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSR 170

Query: 277 LEHSLNCNDEKFCHRG-SITLKSIRTGVPIIDQI 375
              +   N++KF     S   + +  G+ +   +
Sbjct: 171 FHDNRRWNEQKFMELAVSAVEEQLSNGIQLFSNV 204


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = -2

Query: 827  VAPDIITNIATGTIYIQYLAKNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIY 660
            V+PDI T++     Y  YL +N + SFI  FSRA   L  S   + + +SG   G C + 
Sbjct: 1476 VSPDISTHL-----YKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLI 1530

Query: 659  LK*NLELSLYSLV 621
                 +L+++S++
Sbjct: 1531 TFAQNKLTVHSVL 1543


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 764 NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 657
           N L+SF +PF +AS+      ++ + + TGA  I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 769 AKYWMYIVPVAIFVMISGATNPEAQHQLDVNTXL 870
           +++W+    + I+ ++   T  E +HQLD+ + L
Sbjct: 112 SRFWLLDTLLTIYQLLREKTEDEKEHQLDLASNL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,059
Number of Sequences: 5004
Number of extensions: 56440
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)