Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N03
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 218 NRCTVANNP-MKTGSLMIHTKSHT 286
           ++CTV +   +++G L+IH ++HT
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHT 199


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 687 IFVTVMQYLFVNRVLGN 637
           +F+ +M+Y  VN VLG+
Sbjct: 318 VFMALMEYCLVNIVLGD 334


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 285 VCDFVWIINEPVFI 244
           +CDF  +I  P+FI
Sbjct: 92  ICDFFMMIKTPIFI 105


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 693 ALIFVTVMQYLFVNRVLGNKLHCTAL 616
           A++   V+  + V  V+GN L C A+
Sbjct: 41  AILIALVLGSIIVGTVIGNILVCVAV 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,635
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)