Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N01
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...   119   6e-28
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   2.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.5  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   3.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   3.5  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   4.7  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   8.1  

>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  119 bits (286), Expect = 6e-28
 Identities = 56/79 (70%), Positives = 65/79 (82%)
 Frame = +3

Query: 477 LNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVI 656
           LN+AG LQVYIHT K VLIE+NP  RIPRTFKRF+GLMVQLLHK +IR+ +G  KLLKVI
Sbjct: 211 LNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVI 270

Query: 657 KNPVTSHLPVGVKKITMSF 713
           KNPVT +LP   +K T+SF
Sbjct: 271 KNPVTDYLPPNCRKATLSF 289



 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
 Frame = +2

Query: 254 PIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS----FELLNCDDHGHILRKNDRDPG 421
           PIP   + SH     +RLIV+L+ A LE  K G +    ++LLNCDDH  IL+K +R+  
Sbjct: 134 PIPARSIGSH-DTTTQRLIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIA 192

Query: 422 SCRPDITHQSLLMLMDSPFEQS 487
             RPDITHQ LL L+DSP  ++
Sbjct: 193 QARPDITHQCLLTLLDSPLNKA 214


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 354 FPFFTLSSCAFSRITIRRFSCFFMCEVTKCLGIGSNSKXXXLETNLLFXPI-LECTLQCX 178
           F  F+  +CA+  ++I   S  ++C  ++ LG  S       E ++L   + +E +  C 
Sbjct: 135 FHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCI 194

Query: 177 DXFKARDYDR 148
             ++AR  D+
Sbjct: 195 YLYEARHLDQ 204


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 601 YTSLQLEHQMGQ*NF*KLLKILSRHIYQLESRKLLCLFSSKIVQNCRDLVPK 756
           Y SLQL H++   +F   +       Y +E   + CL  + I+Q  R +V +
Sbjct: 801 YDSLQLAHKVILNSFYGYVMRKGSRWYSIEMAGITCLTGATIIQMARQIVER 852


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 531 LKHFFLYEYRPAVSQLCSN-GESINMRR 451
           LKH FL E RPA S L  N  E+ N R+
Sbjct: 286 LKHPFLSEKRPATSNLLPNVRENFNARK 313


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 597 LLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSF 713
           +L   A+  SDG +++L+V ++PV  H+ V     T  F
Sbjct: 288 ILGFLAVVCSDGKLRVLRVPRSPVKFHVFVEQADFTFGF 326


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 655 ITFKSFIGPSDALIANLCRS*TI 587
           I ++SFI   D L ANLCR+ T+
Sbjct: 121 IRYQSFIALQDKLHANLCRNRTL 143


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 623 CSNCKLV*KLNH*SSKTLECSRYSCLW 543
           CS CK   ++N  S + L C    CLW
Sbjct: 38  CSTCK---RINKRSIRCLSCHSVGCLW 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,485
Number of Sequences: 5004
Number of extensions: 62086
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)