Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_N01
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U72514-1|AAC51641.1| 239|Homo sapiens C2f protein. 136 1e-31
U47924-20|AAB51325.1| 151|Homo sapiens C2f protein. 136 1e-31
BC055314-1|AAH55314.1| 244|Homo sapiens EMG1 nucleolar protein ... 136 1e-31
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 30 9.6
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 30 9.6
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 30 9.6
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 30 9.6
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 30 9.6
>U72514-1|AAC51641.1| 239|Homo sapiens C2f protein.
Length = 239
Score = 136 bits (329), Expect = 1e-31
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +3
Query: 477 LNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVI 656
LNRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVI
Sbjct: 95 LNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVI 154
Query: 657 KNPVTSHLPVGVKKITMSF 713
KNPV+ H PVG K+ SF
Sbjct: 155 KNPVSDHFPVGCMKVGTSF 173
Score = 95.1 bits (226), Expect = 3e-19
Identities = 44/65 (67%), Positives = 51/65 (78%)
Frame = +2
Query: 299 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPF 478
+RLIV+LE A LE+VK G ++ELLNCD H IL KN RDPG RPDITHQSLLMLMDSP
Sbjct: 36 RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 95
Query: 479 EQSWL 493
++ L
Sbjct: 96 NRAGL 100
Score = 59.3 bits (137), Expect = 2e-08
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 649 KLLKILSRHI---YQLESRKLLCLFSSKIVQNCRDLVPKDEPIVMVIGAMAHGXXEVXYS 819
KLLK++ + + + K+ FS +V + R+LVP +PIV V+GA AHG V Y+
Sbjct: 149 KLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYT 208
Query: 820 EXVISISNY 846
E ++SISNY
Sbjct: 209 EKMVSISNY 217
>U47924-20|AAB51325.1| 151|Homo sapiens C2f protein.
Length = 151
Score = 136 bits (329), Expect = 1e-31
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +3
Query: 477 LNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVI 656
LNRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVI
Sbjct: 7 LNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVI 66
Query: 657 KNPVTSHLPVGVKKITMSF 713
KNPV+ H PVG K+ SF
Sbjct: 67 KNPVSDHFPVGCMKVGTSF 85
Score = 59.3 bits (137), Expect = 2e-08
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 649 KLLKILSRHI---YQLESRKLLCLFSSKIVQNCRDLVPKDEPIVMVIGAMAHGXXEVXYS 819
KLLK++ + + + K+ FS +V + R+LVP +PIV V+GA AHG V Y+
Sbjct: 61 KLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYT 120
Query: 820 EXVISISNY 846
E ++SISNY
Sbjct: 121 EKMVSISNY 129
>BC055314-1|AAH55314.1| 244|Homo sapiens EMG1 nucleolar protein
homolog (S. cerevisiae) protein.
Length = 244
Score = 136 bits (329), Expect = 1e-31
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +3
Query: 477 LNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVI 656
LNRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVI
Sbjct: 100 LNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVI 159
Query: 657 KNPVTSHLPVGVKKITMSF 713
KNPV+ H PVG K+ SF
Sbjct: 160 KNPVSDHFPVGCMKVGTSF 178
Score = 95.1 bits (226), Expect = 3e-19
Identities = 44/65 (67%), Positives = 51/65 (78%)
Frame = +2
Query: 299 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPF 478
+RLIV+LE A LE+VK G ++ELLNCD H IL KN RDPG RPDITHQSLLMLMDSP
Sbjct: 41 RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 100
Query: 479 EQSWL 493
++ L
Sbjct: 101 NRAGL 105
Score = 59.3 bits (137), Expect = 2e-08
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 649 KLLKILSRHI---YQLESRKLLCLFSSKIVQNCRDLVPKDEPIVMVIGAMAHGXXEVXYS 819
KLLK++ + + + K+ FS +V + R+LVP +PIV V+GA AHG V Y+
Sbjct: 154 KLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYT 213
Query: 820 EXVISISNY 846
E ++SISNY
Sbjct: 214 EKMVSISNY 222
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 284 IKKQEKRLIVILEN--AQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITH-QSL 454
+KK+E+R + I++ AQL+ +KN + + +D H + + + G ++TH Q
Sbjct: 852 LKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKE 911
Query: 455 LMLMDSPFEQ 484
+ +++ EQ
Sbjct: 912 VTAIETKLEQ 921
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 284 IKKQEKRLIVILEN--AQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITH-QSL 454
+KK+E+R + I++ AQL+ +KN + + +D H + + + G ++TH Q
Sbjct: 852 LKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKE 911
Query: 455 LMLMDSPFEQ 484
+ +++ EQ
Sbjct: 912 VTAIETKLEQ 921
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 284 IKKQEKRLIVILEN--AQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITH-QSL 454
+KK+E+R + I++ AQL+ +KN + + +D H + + + G ++TH Q
Sbjct: 852 LKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKE 911
Query: 455 LMLMDSPFEQ 484
+ +++ EQ
Sbjct: 912 VTAIETKLEQ 921
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
of chromosomes 1-like 1 protein.
Length = 1233
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 284 IKKQEKRLIVILEN--AQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITH-QSL 454
+KK+E+R + I++ AQL+ +KN + + +D H + + + G ++TH Q
Sbjct: 852 LKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKE 911
Query: 455 LMLMDSPFEQ 484
+ +++ EQ
Sbjct: 912 VTAIETKLEQ 921
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 284 IKKQEKRLIVILEN--AQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITH-QSL 454
+KK+E+R + I++ AQL+ +KN + + +D H + + + G ++TH Q
Sbjct: 852 LKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKE 911
Query: 455 LMLMDSPFEQ 484
+ +++ EQ
Sbjct: 912 VTAIETKLEQ 921
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,165,366
Number of Sequences: 237096
Number of extensions: 2098301
Number of successful extensions: 3838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3838
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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