Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_N01
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical...   113   2e-25
U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine rece...    29   5.8  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39A1A.14 protein.
          Length = 231

 Score =  113 bits (271), Expect = 2e-25
 Identities = 50/79 (63%), Positives = 65/79 (82%)
 Frame = +3

Query: 477 LNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVI 656
           LNRAG L+V+  T KNVL++++PQ RIPRTF RF GLMVQLLHK +IRA++   KL+ V+
Sbjct: 85  LNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVV 144

Query: 657 KNPVTSHLPVGVKKITMSF 713
           KNPV++HLPVG +K+ MSF
Sbjct: 145 KNPVSNHLPVGSRKMLMSF 163



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/78 (41%), Positives = 46/78 (58%)
 Frame = +2

Query: 254 PIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRP 433
           P  K + T +  + +K L V+LE   LE+ K G  + +L+ D H + LRK  +DP   RP
Sbjct: 11  PNAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRP 70

Query: 434 DITHQSLLMLMDSPFEQS 487
           DI HQ LL L+DSP  ++
Sbjct: 71  DILHQCLLNLLDSPLNRA 88



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +1

Query: 664 LSRHIYQLESRKLLCLFSSKIVQNCRDLV-PK-DEPIVMVIGAMAHGXXEVXYSEXVISI 837
           +S H+  + SRK+L  F+   +     LV P+ DEP+V++IG +A G   V Y++    I
Sbjct: 148 VSNHL-PVGSRKMLMSFNVPELTMANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKI 206

Query: 838 SNY 846
           SNY
Sbjct: 207 SNY 209


>U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine
           receptor, class u protein48 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 565 VLGILVCGLISIKTFFSV*I*TCSKPALFKRGVHQH 458
           VLG+  C  + +  F  + I  CS+P++  + +H H
Sbjct: 31  VLGLSACVFLGLICFIRMAIIYCSQPSMATKAIHPH 66


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 332 LESVKNGNSFELLNCDDHGHILRKNDRDPGSCR 430
           L+S KNG  +++ N +D  ++   +D DP + R
Sbjct: 26  LKSYKNGTVYQVANLEDSANLYVASDDDPSNLR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,131
Number of Sequences: 27780
Number of extensions: 355320
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)