Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M24
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   2.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   7.9  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   7.9  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 368 GFRCPRCGATGDRAHTIKYCPQNSD 442
           G+ C RCG  G   H I+ CP N+D
Sbjct: 182 GYICYRCGQKG---HWIQACPTNAD 203


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 45  IYLWKREKSMEPILHKLKFLHKE 113
           IY+++R KSM   +H +K +H+E
Sbjct: 268 IYVYRRTKSMMRRVHTIKKVHQE 290


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 45  IYLWKREKSMEPILHKLKFLHKEVNYLPRLCVSTSRK 155
           ++L+ +EK  E I  +LKFLH E + L   C++  R+
Sbjct: 547 MFLFPQEKRDEAIEARLKFLHSEGDLL--TCLNALRQ 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,966
Number of Sequences: 5004
Number of extensions: 45753
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)