Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M24
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0714 + 6223269-6226250                                           31   1.6  
12_01_0730 + 6505759-6508806                                           30   2.1  
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    30   2.1  

>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 65   KIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALLSLTPDQYQF 211
            ++D  +S     +    E+P E   ++F   +++    L+   PD YQF
Sbjct: 873  RLDQLESLDLSFNELSGEIPKELASLNFLSTLNLSNNTLVGRIPDSYQF 921


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 65   KIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALLSLTPDQYQF 211
            ++D  +S     +    E+P E   ++F   +++    L+   PD YQF
Sbjct: 895  RLDQLESLDLSFNELSGEIPKELASLNFLSTLNLANNTLVGRIPDSYQF 943


>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 374 RCPRCGATGDRAHTIKYCPQNSD 442
           R  RC    +R HT KYCP++ +
Sbjct: 303 RVKRCSKCDERGHTYKYCPKDKE 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,751
Number of Sequences: 37544
Number of extensions: 321187
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)