Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_M24
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 35 0.065
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 35 0.065
U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related ... 35 0.065
U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical pr... 35 0.065
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 31 1.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 30 1.8
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 30 1.8
Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical pr... 29 5.6
AC024817-37|AAF59579.1| 107|Caenorhabditis elegans Hypothetical... 28 7.4
>Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical
protein R03D7.7 protein.
Length = 311
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +2
Query: 338 RGRVKCPVLRGFRCPRCGATGDRAHTIKY 424
RGRV CP LR C CGATGD AHT K+
Sbjct: 275 RGRVVCPKLRSMVCGICGATGDNAHTTKH 303
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical protein
Y53C12B.3b protein.
Length = 871
Score = 35.1 bits (77), Expect = 0.065
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = +2
Query: 50 LVETRKIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALLSLTPDQYQFLLIYVE 229
LVE++ D ST+ S S P + KK + + A + T + +
Sbjct: 628 LVESK--DDQTSTENSESPSRSSTPKHRKKTP-KKDFKVDQEASIEATKTEISEENPKTD 684
Query: 230 ALRQKR-IGLQRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDR 406
++ K + + C C+ +H ++ G + C ++ +C C ATG++
Sbjct: 685 DIQSKDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQ 744
Query: 407 AHTIKYCPQNSD 442
H CP+ +
Sbjct: 745 GHHPLICPKKKE 756
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical protein
Y53C12B.3a protein.
Length = 867
Score = 35.1 bits (77), Expect = 0.065
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = +2
Query: 50 LVETRKIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALLSLTPDQYQFLLIYVE 229
LVE++ D ST+ S S P + KK + + A + T + +
Sbjct: 625 LVESK--DDQTSTENSESPSRSSTPKHRKKTP-KKDFKVDQEASIEATKTEISEENPKTD 681
Query: 230 ALRQKR-IGLQRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDR 406
++ K + + C C+ +H ++ G + C ++ +C C ATG++
Sbjct: 682 DIQSKDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQ 741
Query: 407 AHTIKYCPQNSD 442
H CP+ +
Sbjct: 742 GHHPLICPKKKE 753
>U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related
protein 2 protein.
Length = 259
Score = 35.1 bits (77), Expect = 0.065
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 QRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 430
+R + C +C+ G + W TH K KC L C CGA G+ HT YCP
Sbjct: 162 RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 212
>U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical
protein T02G5.11 protein.
Length = 184
Score = 35.1 bits (77), Expect = 0.065
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 QRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 430
+R + C +C+ G + W TH K KC L C CGA G+ HT YCP
Sbjct: 87 RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 137
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 418 NGVSSVPGGPTARAAEPSKYRALHPTAPILQSMRS 314
+G+SS PGGP + P RA P+ S RS
Sbjct: 1299 SGISSAPGGPNPSSGAPGGLRAHFHVGPVPSSGRS 1333
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 260 RHFECAFCKKNGESVSWYRTHALKDGRGRV 349
R F+CA+C K SV Y H G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 260 RHFECAFCKKNGESVSWYRTHALKDGRGRV 349
R F+CA+C K SV Y H G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279
>Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical
protein C25F9.8 protein.
Length = 332
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 260 RHFECAFCKKNGESVSWYRTHALKDGRGRVKC 355
R FE C KNG + WY + +G+ V+C
Sbjct: 223 RRFEDLLCVKNGTTFDWYFGNLKLEGQITVEC 254
>Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical
protein F58E6.3 protein.
Length = 293
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 326 LKDGRGRVKCPVLRGFRCPRCGAT 397
LK GRG KC GF RC AT
Sbjct: 269 LKTGRGETKCLCASGFAGKRCQAT 292
>AC024817-37|AAF59579.1| 107|Caenorhabditis elegans Hypothetical
protein Y54G2A.19 protein.
Length = 107
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 350 SPDRAHPSEHAFCTMTLTPHFS-YRRRT--QNVFVDRFASDEELRRKLEGTDTDQES 189
S R HPS + + S Y RT +N +D SDEELR+ +EG D+ES
Sbjct: 47 SDTRGHPSTGRKSHNSTSAQSSVYNSRTDPENAAMD---SDEELRKMMEGFVDDEES 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,673
Number of Sequences: 27780
Number of extensions: 276802
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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