Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_M23
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 171 2e-43
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 149 5e-37
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 66 7e-12
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 2.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 4.9
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 4.9
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 6.5
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 171 bits (415), Expect = 2e-43
Identities = 87/140 (62%), Positives = 104/140 (74%)
Frame = +3
Query: 141 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 320
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 321 YGLVVAVLIAGALQXPANYPLYKGFIHLGAGLAVGFSXXXXXXXXXXXXXXXXRGTAQQP 500
YGLVV+VLI+G L+ + LY GFI LGAGL+VG + RGTAQQP
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124
Query: 501 RLXVGMILXLIXAEVLGLYG 560
RL V MIL LI AEVLGLYG
Sbjct: 125 RLFVAMILILIFAEVLGLYG 144
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 149 bits (361), Expect = 5e-37
Identities = 72/140 (51%), Positives = 93/140 (66%)
Frame = +3
Query: 141 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 320
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 321 YGLVVAVLIAGALQXPANYPLYKGFIHLGAGLAVGFSXXXXXXXXXXXXXXXXRGTAQQP 500
YGLV++VLIAG + +Y L+ GFIHL AGLAVG + + +Q
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126
Query: 501 RLXVGMILXLIXAEVLGLYG 560
R+ V M+L LI AEVLGLYG
Sbjct: 127 RIFVSMVLILIFAEVLGLYG 146
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 66.1 bits (154), Expect = 7e-12
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Frame = +3
Query: 159 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 338
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 339 VLIAGALQ--XPANY----PLYKGFIHLGAGLAVGFSXXXXXXXXXXXXXXXXRGTAQQP 500
++ + + PA + Y GF G+ VG AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 501 RLXVGMILXLIXAEVLGLYG 560
L V +++ I VLGL+G
Sbjct: 165 SLFVKVLVVEIFGSVLGLFG 184
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 144 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 323
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 324 GLVVAVLIAGAL 359
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 120 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 284
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 285 IIPVVMAGIIAIYGLVVAVLI 347
+ P+V++ IIA + + +++
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIML 1504
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 484 VLLSSLGYXSE*FLX---LFXLKYWVFTGLIVAIYLVHKNKRP 603
+L SSL S FL LF + W++ L+V +++ RP
Sbjct: 563 ILTSSLASTSANFLPGEILFRIAIWIYASLLVTCFVLALGNRP 605
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 398 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 285
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,896
Number of Sequences: 5004
Number of extensions: 51253
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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