Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M23
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   221   5e-60
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  221 bits (541), Expect = 5e-60
 Identities = 113/143 (79%), Positives = 118/143 (82%)
 Frame = +3

Query: 132 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 311
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 312 IAIYGLVVAVLIAGALQXPANYPLYKGFIHLGAGLAVGFSXXXXXXXXXXXXXXXXRGTA 491
           IAIYGLVVAVLIAG L+ P  Y L+KGF+HLGAGLAVGFS                RGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 492 QQPRLXVGMILXLIXAEVLGLYG 560
           QQPRL VGMIL LI AEVLGLYG
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYG 146


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 347 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 249
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 130 LKIIQSTDPSLELWGRRLLSSS 195
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,835
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)