Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M22
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    32   0.12 
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    31   0.16 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   2.0  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    26   6.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.0  

>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 254 VPSLVVSLYPYIGPSFVSTFNFVFSLFAVIFTELSI 147
           + S+V+S  P+ GP F++ F+F  ++F  I   +++
Sbjct: 196 IVSIVISCLPFFGPLFLNVFSFFATIFTFIAAVIAV 231


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 262 KFKGIPYAKPPVGHLRFLPPL 324
           +F GI YAKPPVG LR+  P+
Sbjct: 20  RFTGIRYAKPPVGKLRWRRPV 40


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 83  ISSWDQFNTFIKLVANC 133
           ISSW+ FNT++K++  C
Sbjct: 367 ISSWEYFNTWLKIIQLC 383


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 408 ICSYLNDQVKAIGGSWVQSFSLVQGV 331
           +C +LN++ +A G  W++   +V+ V
Sbjct: 123 VCRFLNEENEAFGHEWLRETDVVRAV 148


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 500 YG-FSFNMDYLYDTSLINNQDVVFVTCG--FRLGAXGFLSINDLQL 628
           YG  S  M     T++I   +V+ +T    +   A GFLSINDL L
Sbjct: 96  YGELSIEMSEQLLTNIILKYNVIVITADLFYLFLARGFLSINDLNL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,190
Number of Sequences: 5004
Number of extensions: 65996
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)