Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M21
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095...    34   0.18 
04_03_0264 - 13619329-13621708,13621742-13621830                       30   2.2  
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268...    29   3.8  
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999...    29   3.8  
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626     29   5.0  
04_01_0426 - 5620980-5621114,5622675-5622886,5623290-5623412,562...    29   6.7  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   8.8  

>05_06_0186 -
           26207298-26208548,26208743-26208853,26209286-26209507,
           26209623-26209658
          Length = 539

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 611 SKGAGGQVKPKNFSASQEGTRSAQSQ---RLKSGLNASXRRAYHVESTTTYACSVLATIG 441
           S  A G+ + ++FS     T S+  Q   RLK  L AS  ++ +    T+ ACSV ATIG
Sbjct: 99  SVSAKGKQEIESFSCFLSDTNSSLKQWSSRLKLALQASPEKSKNESKFTSAACSVPATIG 158


>04_03_0264 - 13619329-13621708,13621742-13621830
          Length = 822

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 432 ASPTNCGQYRTCVGGRAFDMVCPPGT-SIQSRLQPL 536
           A PT CG+Y  C GG+    +CP  T S  S  QP+
Sbjct: 304 AFPTVCGEYAICTGGQC---ICPLQTNSSSSYFQPV 336


>09_02_0533 -
           10325681-10326211,10326260-10326328,10326758-10326855,
           10326968-10327117,10327848-10327976,10328063-10328999
          Length = 637

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
 Frame = +3

Query: 276 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTN 446
           C DG   NP +    +    C  P + +C G  +  P     DCP  Y   +   ++P  
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353

Query: 447 CGQYRTC 467
           C     C
Sbjct: 354 CKDIDEC 360


>03_02_0635 +
           9994327-9994644,9995510-9995706,9995806-9995941,
           9996019-9996270,9996356-9996588,9996695-9996812,
           9996884-9997036,9997126-9997212,9997407-9997697
          Length = 594

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 201 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 317
           +G+YK +  C  Y++  D+      CPDG  F+P  + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463


>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
          Length = 369

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 532 RCDWADLVPSCDAEKFLGFT 591
           +CDW  ++  C  + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186


>04_01_0426 -
           5620980-5621114,5622675-5622886,5623290-5623412,
           5623705-5623759,5624530-5624676,5624841-5624915,
           5624987-5625046,5625334-5625519
          Length = 330

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 21/86 (24%), Positives = 32/86 (37%)
 Frame = -1

Query: 557 GTRSAQSQRLKSGLNASXRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIRCCLG 378
           G      +R K     S R   H  ++T    +  A     + + F+D +L   ++CCL 
Sbjct: 213 GIADQSHERSKKDPGNSFRALVHSAASTASKLAKHAYEAASTNKRFDDELL--PLKCCLM 270

Query: 377 RLDAPSSYTCHFNWITARICRPFHAR 300
            +  P  Y  H     A  C   H R
Sbjct: 271 SVSLPWDYIAHDLLHKAMPCNRKHLR 296


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 81  YAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVICK-ARNGYYKTDANCDTYIECRDY 257
           + +QR   + Y+YLA+++    + +      A   + +  RNG +   A+C  Y+     
Sbjct: 736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQ 795

Query: 258 QATNMICPDGLHFNPSVEWPA 320
             T ++    + F  + + PA
Sbjct: 796 VVTKVVFRRDISFKLTSKLPA 816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,702,874
Number of Sequences: 37544
Number of extensions: 521141
Number of successful extensions: 1217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)