Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M21
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.71 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 119 PRLASGCKPCPINTRCCYCPERNL 190
           P +   CK C   T+CC+  +  L
Sbjct: 431 PPIGCECKTCNSKTKCCFAQDDGL 454


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = -1

Query: 620 PIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASXRRAYHVESTTTYACSVLATIG 441
           P+A+ G GG  + +    + + +RS   +++K       R+  H+ S             
Sbjct: 369 PLATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFV 428

Query: 440 GRSVRMFED-AILVRAIRCCLG 378
            +  + F+D   L   +  CLG
Sbjct: 429 VKLFKTFKDRKYLYMLMEACLG 450


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 500 RAYHVESTTTYACSVLATIGGRSVR--MFEDAILVRAIRCCLGRLD--APSSYTCH 345
           R   VE +  Y C V  ++GG SV   +   A L   I      +D   P+++TC+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 563 QEGTRSAQSQRLKSGLNASXRRAYHVESTTTYAC 462
           Q   R   SQR  SG   S    +HV S+   +C
Sbjct: 418 QPAFRCKPSQRFASGRYYSAYSLHHVRSSRESSC 451


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 606 RSRGASETQEFFSITGRYKVGPVTAAEVW 520
           R+ G   ++  FS+  + K  PV  AE+W
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIW 563


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 553 VPSCDAEKFLGFTCPPAPLDAI 618
           VPS   EKFLG+  PP   D +
Sbjct: 22  VPSM-REKFLGWNVPPEYSDLV 42


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 549 PCTFL*C*KILGFHLPPCS 605
           PC  +    +LGF LPP S
Sbjct: 241 PCVLIASMAVLGFTLPPDS 259


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 553 VPSCDAEKFLGFTCPPAPLDAI 618
           VPS   EKFLG+  PP   D +
Sbjct: 22  VPSM-REKFLGWNVPPEYSDLV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,048
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)