Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M20
         (982 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094...    29   5.7  
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     28   9.9  

>02_05_0405 +
           28708077-28708391,28708478-28708573,28709030-28709450,
           28710051-28710141,28710483-28710819,28710905-28711053,
           28711782-28712295
          Length = 640

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 406 PXFKXPXFXXPPXPPPFFXPXXXXGGAP 489
           P F+ P F  PP PPP   P      AP
Sbjct: 33  PAFRFPGFSAPPTPPPAAQPPPPTPPAP 60


>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 239 KXXPPXXPXFXPPXPXFFFFXP 304
           K  PP  P   PP P F+++ P
Sbjct: 172 KPPPPPPPAIWPPQPSFYYYPP 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,990
Number of Sequences: 37544
Number of extensions: 261790
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)