Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M19
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    27   3.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   6.4  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 242 LSSLDSNYQENITCKEDLKSNPSTLT 319
           LS  DSNY + +   +D K NP+T T
Sbjct: 222 LSDFDSNYDKLVFVAKDPKLNPATQT 247


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +2

Query: 149 SYNSFDQYNNAVINNTRRNIKSRILFEDEEILSSLDSNYQENITCKEDLKSNPSTLT 319
           S NS     NA      +++    L E+E+  SSLD+++++     ++L++N  T+T
Sbjct: 575 SKNSLQTLCNAFQEKLAKSVMQ--LKENEQNFSSLDTSFKKLNESHQELENNHQTIT 629


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/55 (29%), Positives = 34/55 (61%)
 Frame = +2

Query: 152 YNSFDQYNNAVINNTRRNIKSRILFEDEEILSSLDSNYQENITCKEDLKSNPSTL 316
           +++ D+ +NA INN    +++ +  +++ I   LDS  ++N+  ++ LKS  +TL
Sbjct: 486 FSNIDE-SNAFINNQCLELEA-LNRKNDLIRGELDSLKEKNLVAQKQLKSANNTL 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,737
Number of Sequences: 5004
Number of extensions: 18227
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)