Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M19
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0009 + 11216532-11218687,11220727-11225998                       28   8.9  
08_02_0003 + 11180421-11180757,11180773-11185715                       28   8.9  
08_02_0002 + 11173365-11173512,11173528-11178470                       28   8.9  

>08_02_0009 + 11216532-11218687,11220727-11225998
          Length = 2475

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 155  NSFDQYNNAVINNTRRNIKSRILFEDEEILSSLDSNYQENITCKEDLKSNPSTLTSVHYD 334
            NS D  +    N  ++   S+  +E++E +  +DS  +  + C +++K + S  + +  D
Sbjct: 1516 NSPDHLSRTCPNKDQKRYSSK--YEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETD 1573

Query: 335  EL 340
            E+
Sbjct: 1574 EV 1575


>08_02_0003 + 11180421-11180757,11180773-11185715
          Length = 1759

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 155 NSFDQYNNAVINNTRRNIKSRILFEDEEILSSLDSNYQENITCKEDLKSNPSTLTSVHYD 334
           NS D  +    N  ++   S+  +E++E +  +DS  +  + C +++K + S  + +  D
Sbjct: 800 NSPDHLSRTCPNKDQKRYSSK--YEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETD 857

Query: 335 EL 340
           E+
Sbjct: 858 EV 859


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 155 NSFDQYNNAVINNTRRNIKSRILFEDEEILSSLDSNYQENITCKEDLKSNPSTLTSVHYD 334
           NS D  +    N  ++   S+  +E++E +  +DS  +  + C +++K + S  + +  D
Sbjct: 737 NSPDHLSRTCPNKDQKRYSSK--YEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETD 794

Query: 335 EL 340
           E+
Sbjct: 795 EV 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,584
Number of Sequences: 37544
Number of extensions: 89655
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)