Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M16
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.9  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   8.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  YGLPVGHARRLPQAAKMGAYRY 137
           +GLPVG    +P +     YRY
Sbjct: 263 FGLPVGVTAAIPTSENPADYRY 284


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  YGLPVGHARRLPQAAKMGAYRY 137
           +GLPVG    +P +     YRY
Sbjct: 263 FGLPVGVTAAIPTSENPADYRY 284


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  YGLPVGHARRLPQAAKMGAYRY 137
           +GLPVG    +P +     YRY
Sbjct: 263 FGLPVGVTAAIPTSENPADYRY 284


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 73  TVYLWDTRDVCHRLLRW 123
           T+Y +D RD C    +W
Sbjct: 402 TIYKYDVRDGCRTPFQW 418


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 609 LTSAGRSSRGLGKG--HRYSQTKGGSRRG 689
           +T  G+  +GLGKG   R+ +  G + +G
Sbjct: 1   MTGRGKGGKGLGKGGAKRHRKVLGDNIQG 29


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 100 VCHRLLRWVPTDI 138
           VCH  + W+PT +
Sbjct: 807 VCHNGMNWMPTHL 819


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,256
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)