Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M15
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    32   0.12 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    31   0.22 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    30   0.38 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    30   0.50 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.50 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.66 
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.88 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.88 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.88 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   4.7  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   8.2  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   8.2  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   8.2  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +3

Query: 417 LDLYGSEANAVMVNPNSVMPSNFAETP---VKSVVKEE-ASNVLLSSVANRDSESKHNPT 584
           L LYG++A     NP+SV+PSN + TP    K+V KE    N    S    D+ S     
Sbjct: 173 LSLYGNQA----FNPSSVLPSNSSSTPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSN 228

Query: 585 LASPKEEKSHLTFS 626
           L  P    S L  S
Sbjct: 229 LYMPSPPSSALPVS 242


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/85 (24%), Positives = 43/85 (50%)
 Frame = +3

Query: 396 SSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKH 575
           +SS    LD   S  + +   PN     +  + P K++     S+ + + ++NR S+ K 
Sbjct: 311 TSSLPEELD--SSTHSPIYTKPNV---DSMHKQPKKAIAPLSLSSSVTAVISNRTSDKKT 365

Query: 576 NPTLASPKEEKSHLTFSPNTIKVSK 650
             T+A  +++ +HL  SP+ + ++K
Sbjct: 366 RSTVAE-EDDITHLNISPDRLYLNK 389


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 450 MVNPNSVMPSNF-AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLAS 593
           ++ P    P+ F A TP    V    S+V LSS++N +S   H P   S
Sbjct: 453 LIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQS 501


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 288 DLSSISDFQDS---FGTNFSDMPPLLDMDTDNCSTWLNNSSSFVHNLDLYGSEANAVMVN 458
           DL S+  F  +     T  S     ++ D ++C  WLN+  SFV     Y S  N ++  
Sbjct: 85  DLKSVLSFLKNNLPVDTESSSEAFTIEKDNNSC-VWLNSVKSFVEKQFSYSSGTNGILAT 143

Query: 459 PNSVMPSN 482
             + +P N
Sbjct: 144 FLTAIPPN 151


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 432 SEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSES 569
           SE ++ +++ +S +PS  + TP  S++    ++VL SS +   S S
Sbjct: 505 SEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSS 550


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +3

Query: 384 WLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDS 563
           WL+  +  +H  DLY + A++    PNS++ ++ AE     + K EAS   L+S    +S
Sbjct: 213 WLSERN--IHT-DLYETHASS----PNSLLVTSLAE-----IWKSEASRRNLTSSDETNS 260

Query: 564 ESKHNPTLASPKEEKSH 614
            SK + +    KEE SH
Sbjct: 261 FSKLHQSQFGLKEESSH 277


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 453 VNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPN 632
           V P   +P   A  P+K     E     +SS  + +  +K N    + KEE+  L+FS N
Sbjct: 83  VRPEIPLPPA-APIPMKKASNTEPVEKEISSFFSEEGATKENEDFINEKEEEEDLSFSIN 141


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = -1

Query: 526 DASSLTTLFTGVSAKFEGITEFGFTITALASDPYKSKL*TKLELLFSHVEQLSVSMSSNG 347
           DAS   T+FT +S   +G T  G+TI++ +S    S+  T      S         S + 
Sbjct: 739 DASGFNTIFTSISQSSDGETS-GYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSIST 797

Query: 346 GMSEKFVPNES*KSDILLRSV 284
            +S +   N S  S I   SV
Sbjct: 798 SVSSQSSMNSSYSSPISSNSV 818


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 486 AETPVKSVVKEEASNVLLSSVANRDSESKHN 578
           AE+ V+S  K + S   LSS  N+DSE   N
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEKNDN 506


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 264 DIKNEIATDLSSISDFQDSFGTNFS----DMPPLLDMDTDNCSTWLNNSSSFVHNLD 422
           + KN +   LS   +F DSF  N S    ++ P  D+ TDN +   N+ +   H+LD
Sbjct: 47  EFKNNV---LSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASHDLD 100


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 563 RIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKKGT 688
           ++      S+ +    +LNI S+ NK+  SS  RG K ++GT
Sbjct: 11  KVGNTEQVSEKQHTDTALNI-SQDNKTSSSSAKRGAKGRRGT 51


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
 Frame = +3

Query: 213 SDMDLYITDSLQDMLDIDIKNEIATDLSSISDFQDSFGTNFSDMPPLLDMDTDNCSTWLN 392
           S +DLY +D+     DI     I    +  +D++    +    M     MD D  S  L+
Sbjct: 76  STLDLYSSDNAAIDTDISEDETINQRHAPQTDYRYPNTSANPKMGLEESMDIDMPSIDLD 135

Query: 393 NSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS----SVANRD 560
                + N   +  ++N +  N NS   ++   +PV    + + SNVL S    SV + D
Sbjct: 136 -----ISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTGRTSVLHID 190

Query: 561 SESKHNPTLASPKEEKSHLTFS 626
           +E        +P ++ +   FS
Sbjct: 191 AEQSQTNNTVTPLKDDALSLFS 212


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 145 YAKNIIKLTDITPLTPHKP 89
           YAK I+ L D TP+ P +P
Sbjct: 218 YAKKILDLLDDTPIVPGEP 236


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 477 SNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSKV 653
           S+  +  VK V K+  S    +   NRD +SK     ASPK  +S L  +  T  + KV
Sbjct: 308 SDKKQVTVKEVPKK-LSVKNAAKTTNRDEDSKGKKAKASPKVSQSSLK-ANGTTAIKKV 364


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 510 VKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVS 647
           +KE+  +   +   + DS+   N  L+SP  EK+ L F  N+ + S
Sbjct: 1   MKEQEFSYREAKDVSLDSKGLENSFLSSPNREKTPLFFEGNSNETS 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,890
Number of Sequences: 5004
Number of extensions: 66507
Number of successful extensions: 205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)