Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_M15
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 30 1.9
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 29 4.4
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 29 4.4
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 29 4.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 29 4.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 29 4.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 4.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.8
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 429 GSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEK 608
GS A A +PNS+ PSN TP + + + A+ + K TL +
Sbjct: 31 GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAGASASGSANYKLMCTLEGHTKSI 90
Query: 609 SHLTFSP 629
S FSP
Sbjct: 91 SSAKFSP 97
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 581 NASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKKGTXRGEADGYLRKKK*QDCSQRXLKD 760
N+ + ++ N+ S H+ N G+ KK T + + +G ++K +DCS ++
Sbjct: 556 NSHRERKDSHRSNVSSHHSDDAKKHMN-GHSKKKETEKLKENGDVKKFNIEDCSNVNIES 614
Query: 761 WVN 769
W +
Sbjct: 615 WAD 617
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 309 FQDSFGTNFSDMPPLLDMDTDNCSTWLNNSS 401
FQ+ FGT+ + P D NC W + S
Sbjct: 99 FQNEFGTSSYSLHPFFSRDFVNCEPWTSEKS 129
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 77 KTDCGFMWSEWCYICQFYNVFSVNVRN 157
+TDCG + Y C FY + + VRN
Sbjct: 1420 ETDCGNFYGAIIYFCSFYLIITYIVRN 1446
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 77 KTDCGFMWSEWCYICQFYNVFSVNVRN 157
+TDCG + Y C FY + + VRN
Sbjct: 1454 ETDCGNFYGAIIYFCSFYLIITYIVRN 1480
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 77 KTDCGFMWSEWCYICQFYNVFSVNVRN 157
+TDCG + Y C FY + + VRN
Sbjct: 1512 ETDCGNFYGAIIYFCSFYLIITYIVRN 1538
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 77 KTDCGFMWSEWCYICQFYNVFSVNVRN 157
+TDCG + Y C FY + + VRN
Sbjct: 1565 ETDCGNFYGAIIYFCSFYLIITYIVRN 1591
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 77 KTDCGFMWSEWCYICQFYNVFSVNVRN 157
+TDCG + Y C FY + + VRN
Sbjct: 1484 ETDCGNFYGAIIYFCSFYLIITYIVRN 1510
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 486 AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSK 650
AET V + K +A S A +DS+SK + + EEKS T P K SK
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKS-TTEKPTNDKTSK 12658
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 486 AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSK 650
AET V + K +A S A +DS+SK + + EEKS T P K SK
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKS-TTEKPTNDKTSK 12658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,726
Number of Sequences: 27780
Number of extensions: 358894
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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