Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M09
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    32   0.64 
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    32   0.64 
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    32   0.64 
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    28   7.9  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    28   7.9  

>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 577 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 732
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 577 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 732
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 577 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 732
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 577 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 732
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 286 LGIFWFKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANRGSPISKL 432
           + ++W K K++ AKSD GG +   S K +      A +EA  GS +S +
Sbjct: 152 MDVYWGKNKKKPAKSD-GGSKSSSSKKNDARGPSEAPSEA--GSEVSSV 197


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 286 LGIFWFKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANRGSPISKL 432
           + ++W K K++ AKSD GG +   S K +      A +EA  GS +S +
Sbjct: 152 MDVYWGKNKKKPAKSD-GGSKSSSSKKNDARGPSEAPSEA--GSEVSSV 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,435
Number of Sequences: 27780
Number of extensions: 335851
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)