Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M07
         (933 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.017
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    39   0.16 
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    34   4.5  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 42.3 bits (95), Expect = 0.017
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +3

Query: 456 SSLTXSLXSXXRLRRAVSXXSKAXXRLSTEXGXXA 560
           SSLT SL S  RLRRAVS  SKA  RLSTE G  A
Sbjct: 21  SSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNA 55


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 39.1 bits (87), Expect = 0.16
 Identities = 20/36 (55%), Positives = 20/36 (55%)
 Frame = -1

Query: 576 LTRSXXRYXXILWITXXPPXXEXIPLAAAGRPXXAS 469
           LT S   Y  ILWIT  PP  E  PLAA  RP  AS
Sbjct: 25  LTCSFRLYPLILWITVLPPLSELTPLAAVERPSVAS 60


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +1

Query: 394 CXNESATXRGEAVXVLGARXXPRSLTRXXRXXGCG 498
           C  + AT R EAV VL A    RS TR  R  GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,160,515
Number of Sequences: 1657284
Number of extensions: 2991940
Number of successful extensions: 8166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7424
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)