Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M05
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    28   2.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   6.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   8.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.3  

>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 310 NVFIYQYTNLLNKSYL-NIVLNLN*YMNFTMKYIMCYKGARNFAHM 444
           N F+   +++LN S L    LN +  +N T+  I+CY G    +H+
Sbjct: 194 NTFMTVNSSILNASQLPQEELNADSLLNLTIYCILCYPGFHLISHL 239


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +3

Query: 189 RGSKSCSKIPSHTNIHTSEANKSVLKTS---FVYLNCL----HTAF-IECIYLSIY 332
           R  + C +     + H S+ NK +L+       + NC+    H  F +EC YL++Y
Sbjct: 97  RFCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLY 152


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 286 IVYTQHS*NVFIYQYTNLLNKSYLNIVLNLN*YMNFTMKYIMCY 417
           +V+T     + +      L +S +   LN N Y+NF + + MC+
Sbjct: 424 VVFTGDDTKIMLNSGAPPLKRSRITRNLNWNVYLNFIILFSMCF 467


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 ITISLVQYGTYINTLHTFCRIFF 461
           +T  L +YG  IN   TF R FF
Sbjct: 115 LTSCLEEYGNQINQQETFIRFFF 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,285
Number of Sequences: 5004
Number of extensions: 38111
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)