Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M05
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    29   3.8  
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    29   6.6  

>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 96  NLLNFIFYFLNIELSAVLNKYTKFRVNPTF*RGSKSCSKIPSHTNIHTSEANKSVLKTSF 275
           NL+ +   F  +    + N  T+F+   TF +G+K    + + ++ HTSE +  V K  F
Sbjct: 473 NLITYEDRFNLLTKLYIANNLTEFQRVFTFSKGNKKTILVNTSSSAHTSEFDLEVEKRGF 532

Query: 276 V 278
           +
Sbjct: 533 I 533


>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +1

Query: 286 IVYTQHS*NVFIYQYTNLLNKSYLNIVLNLN*YMNFTMKYIMCYKGARNFAHMLKEDNKK 465
           IV   H   ++ Y + NL+ + Y   +   N  + + +KY   ++ +  +  +LK+ N++
Sbjct: 268 IVIGSHISAIYHYGFANLMMRRYAEAIREFNKILLYILKYKQYHQKSPQYDQILKK-NEQ 326

Query: 466 IY 471
           +Y
Sbjct: 327 MY 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,289
Number of Sequences: 37544
Number of extensions: 197531
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)