Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M04
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    31   0.16 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.5  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 350 ELMLLKLQVVNIITYEQNKKQQFHLQSWKTKAN 448
           E   L L V+ +   ++N+KQ+F ++SW++  N
Sbjct: 240 EETFLSLPVITVFNGKKNRKQRFRIRSWRSSLN 272


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 148 VFIGDEGFALKTYLMRPFPRASATQDERKTKFNKRLCRARRVVENAFGILAQKW 309
           VFIG  GF++  YL     R    Q   K    + + R R +V  + GI  Q W
Sbjct: 772 VFIGARGFSISLYLNTLIARDQWKQHIEK---QQDIIRKRHLVFESRGICCQSW 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,479
Number of Sequences: 5004
Number of extensions: 46850
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)