Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_M04
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    48   1e-05
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    31   1.4  

>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/61 (42%), Positives = 37/61 (60%)
 Frame = +1

Query: 244 NKRLCRARRVVENAFGILAQKWRIFLRPIDCDVDTGIDVIKAAGC*HNYLRTKQETAISS 423
           NK+L RAR   E+AFG L+ K+RI  R ++C  +  +D+I A    HNYL  K E  ++ 
Sbjct: 147 NKKLSRARVKAEHAFGRLSAKFRILRREMECPYEKSVDIILALCHLHNYLIGKAEDVVNV 206

Query: 424 P 426
           P
Sbjct: 207 P 207


>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +1

Query: 139 VPHVFIGDEGFALKTYLMRPF-PRASATQDERKTKFNKRLCRARRVVENAFGILAQKWRI 315
           +P   + D GF L   +M+P+ P       E    FN +L   R  VEN FG+L  K+ I
Sbjct: 536 MPPFILADNGFGLHKSMMQPYRPTQIGLNPEENISFNFKLSGTRVKVENVFGVLTSKFHI 595

Query: 316 FLRPIDCDVDTGIDVIKAAGC*HNYLRTKQETAISSPELEDESEPIR 456
           F + +  +  T   +I A    HN      E     P      +P R
Sbjct: 596 FQQNLRLEPKTSQALIIAVCVVHNISVGPLEVIPDDPNRPKFRDPYR 642


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 397 TKQETAISSPELEDESEPIRALITHRPTNRRSTT 498
           T   T+ S+      S PIRA+ T  PT RR+TT
Sbjct: 549 TTSTTSTSTTSSTSSSAPIRAVRTSTPTTRRTTT 582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,985
Number of Sequences: 27780
Number of extensions: 265003
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)